Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1766 152 1e-31 seq2209 138 3e-27 seq2021 111 4e-19 seq2420 89.7 1e-12 >seq1766 Length=1490156 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || |||||||| || |||||||||| | ||| | |||||| Sbjct 1263481 AGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCT 1263422 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| ||||| ||||| || ||||| || || | | || ||||| || ||| Sbjct 1263421 TCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCT 1263362 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| | || | | | || ||| || |||||||||||||||||| Sbjct 1263361 TGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTT 1263302 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||| | ||||| Sbjct 1263301 TTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||| || |||||||| || |||||||||| | || | |||||| Sbjct 1264393 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCT 1264334 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || ||||| | ||||| || || | | || ||||| || ||| Sbjct 1264333 TCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 1264274 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| | || | | | || ||| || |||||||||||||||||| Sbjct 1264273 TGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTT 1264214 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || ||||| | ||||| Sbjct 1264213 TTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 127 bits (140), Expect = 5e-24 Identities = 161/220 (73%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| ||||| |||||||| || |||||||||| | ||| | |||||||| Sbjct 1263250 ACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCC 1263191 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| ||||| ||||| | ||||| || || | | || ||||| || || ||| Sbjct 1263190 AACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGA 1263131 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | | |||||| || ||||| | |||||||||||| Sbjct 1263130 ATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTT 1263071 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTA 152114 || ||||| || || || || | |||||| ||| |||| Sbjct 1263070 CCAGTGAGTGTTTTGACAAAAATTTGCATTCCACCTCTTA 1263031 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| || || || |||||||| || |||||||||| | ||| | ||||||||| Sbjct 1264162 ACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCT 1264103 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| || || ||||| | ||||| ||||| | | || ||||| || |||||| Sbjct 1264102 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGA 1264043 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | || ||| || ||||| | ||||||||| || Sbjct 1264042 ATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAATAGTCTTT 1263983 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || ||||| | |||||| Sbjct 1263982 CCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||||||||| || || ||||| | ||| || | ||||||||||| ||| || Sbjct 1263010 GTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCA 1262951 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || ||||| || | | ||||||||||| ||||||||||| ||| Sbjct 1262950 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTT 1262891 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | ||||| ||| || || ||||| || ||||| || || | || Sbjct 1262890 ACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTT 1262831 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| |||||| Sbjct 1262830 TTGACAAAGATCTGCAT 1262814 >seq2209 Length=4115427 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||||||||| |||||||| || |||||||| | | ||||| Sbjct 664086 AGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGTTCTT 664145 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | | ||||| || | | |||||||| Sbjct 664146 CCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCTTCT 664205 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || ||| |||||| | |||||| || ||||||||||| Sbjct 664206 TTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTG 664265 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || |||||||| || || |||| |||||| Sbjct 664266 ATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||||||||||||||| || || || ||||| | | ||||| Sbjct 663630 AGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTA 663689 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || ||||| | | ||||| || | | |||||||| Sbjct 663690 CCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCTTCT 663749 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || ||| ||| |||||| | |||||| || ||||| | ||| Sbjct 663750 TTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACTTCTAAGGTA 663809 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| |||||||| || || || | ||||| Sbjct 663810 ATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||||||||||||||| || || || ||||| | | ||||| Sbjct 648665 AGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTA 648724 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || || || || | | || || || | | ||||| || Sbjct 648725 CCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCT 648784 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || ||| ||| |||||| |||||||| || ||||| | || Sbjct 648785 TTATCTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTG 648844 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || | |||||| || |||| ||||||||| Sbjct 648845 ATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 648885 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| ||||| ||||| || || || ||||| | | |||||| ||||||||||| | Sbjct 648224 TGAAGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGT 648283 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | | || || || | | |||||||| || |||||||| || Sbjct 648284 TTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTA 648343 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | |||| |||||||| || ||||| | ||||| || ||||| ||| Sbjct 648344 GCTTTAACATTTTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTAATGGTCTTGCCAGTG 648403 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||| ||||| Sbjct 648404 AGAGTTTTGACAAAGATTTGCAT 648426 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| || ||||| || ||||| || || ||||| | | |||| Sbjct 648434 CTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTT 648493 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||||||||| ||| || || || || | | |||||||| | | |||||| Sbjct 648494 CTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCT 648553 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || || ||| | |||| |||||||| || |||||||| Sbjct 648554 TCTTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGT 648613 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || |||||||| || || ||||| || || || | |||||| Sbjct 648614 GTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| || ||||| || |||||||| || ||||| | | ||| Sbjct 663855 CTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGTGTT 663914 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || || || || | | || || || | | |||||| Sbjct 663915 CTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCT 663974 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || || ||| |||||| | |||||| || ||||||||| Sbjct 663975 TCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGA 664034 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || |||||||| || || |||| |||||| Sbjct 664035 GTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664076 >seq2021 Length=1035722 Score = 111 bits (122), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 ||||||| || || || || | |||||| | |||||||||| ||||| || || || Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTT--CCAGCAAA 239260 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||||| | ||||| || | | |||||||| || || |||||||| ||| ||| | Sbjct 239261 AATAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATT 239320 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 |||| | ||||| |||||||||||||| |||||||| ||||| | ||| ||||| Sbjct 239321 TTCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCAC 239380 Query 152093 GAAGACCTGCAT 152104 || | |||||| Sbjct 239381 AAATATCTGCAT 239392 >seq2420 Length=677074 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 ||||| || |||||||||||| ||| ||| | || | | | ||||| || |||||| Sbjct 459046 CCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCTGATGCTTCAACTTCA 458987 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || ||||||||||| || | |||||| Sbjct 458986 AGAGTAATAGTCTTGCCAGTTAGAGTCTTCACAAATATCTGCAT 458943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153784861727201