Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq613 132 5e-26 >seq613 Length=358256 Score = 132 bits (146), Expect = 5e-26 Identities = 162/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 ||||| |||||||||||||||| ||| ||||||||| ||||||| |||||| || || Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 || ||||| ||||||||||| | || || | | ||| || || | | ||||| || Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | | ||| || || || || |||||| ||| ||||| || || | |||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 23952 AAAATGTCTTTCA---TCAGTTGATAATTTTTTCCAATCA 23988 ||||||| ||||| ||||| ||| || ||||||||| Sbjct 260185 AAAATGTTTTTCACTGTCAGT---TAAATTATTCCAATCA 260221 Score = 105 bits (116), Expect = 7e-18 Identities = 139/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 23341 CTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTT 23400 |||||||| |||||||| |||||||||||||| | | | |||| || ||||| | || Sbjct 259407 CTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTATCATTTCA 259466 Query 23401 ACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGA 23460 || || | ||||| ||| ||| || |||||| |||||||| |||| || |||| Sbjct 259467 ACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTGACAGCATCCTTAA-TAATTGA 259525 Query 23461 ACAATAACTTCTTCACTAGGTGGATATTTTAAA---TACTTAAACAATAAACATGCAAAA 23517 | ||| ||||| || ||| | || || | | || |||| ||||||||||||| Sbjct 259526 --TGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 259583 Query 23518 TCACAATGTA 23527 |||||||||| Sbjct 259584 TCACAATGTA 259593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521472153283400