Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2209 107 1e-18 seq1766 96.9 2e-15 >seq2209 Length=4115427 Score = 107 bits (118), Expect = 1e-18 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||| ||||||||||| | |||||| || || || || || || ||||| Sbjct 648196 CATTCCCCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATC 648255 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || || || || |||||||| ||||| || |||||| Sbjct 648256 TGAAAGAGTT--CTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCT 648313 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | ||||| || || ||||| |||| || || |||| ||||| | | Sbjct 648314 GGAGGAATTCCTTCTTTATCTTGAATCTTA-GCTTTAACATTTTCTATTGTGTCTGAAGC 648372 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| ||||| || ||||| || || || ||||||||||| Sbjct 648373 TTCAACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 107 bits (118), Expect = 1e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| |||||||| ||||| ||||| || || ||||| || ||||| Sbjct 664070 TTGCATTCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTA 664129 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||||||||| || |||||||| Sbjct 664130 ATCTGAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATC 664189 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | ||||| || || ||||| ||| | | |||| || || | | Sbjct 664190 GGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGC 664249 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || ||||| ||||| || || || ||||||||||| Sbjct 664250 TTCAACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| |||||||| || || ||||| || ||| || || || || || Sbjct 663614 TTGCATTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATA 663673 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||||||||| || |||||||| Sbjct 663674 ATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATC 663733 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | ||||| || || ||||| |||| || ||| |||| || || | | Sbjct 663734 AGGAGGAATTCCTTCTTTATCTTGAATCTT-AGCTTTAACATTCTCTATTGTATCTGAAG 663792 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| ||||| || ||||| || || || || |||||||| Sbjct 663793 CTTCAACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||||||||| | || || || ||||||||||| || || Sbjct 663842 TTGCATACCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATA 663901 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| | | || || || || || || ||||| ||||| || || ||||| Sbjct 663902 ATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATC 663961 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || || ||||| ||| | | |||| || || | | Sbjct 663962 TGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGC 664021 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || ||||| ||||| || || || ||||||||||| Sbjct 664022 TTCAACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664075 >seq1766 Length=1490156 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| || || || ||||| || || ||||| || ||||| Sbjct 1263275 TTGCATACCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTA 1263216 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || || | || |||| ||| || |||||||||||||| | ||| ||||| Sbjct 1263215 ATCGGAAAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATC 1263156 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGG 44282 | ||| | |||||| || ||| | | || |||| || || | ||||| || | | Sbjct 1263155 AGGAGGAATACCTTCTTTATCC-TGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAG 1263097 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | ||||| || ||||| ||||| || || || || |||||||| Sbjct 1263096 CTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 1263042 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || || ||||| || |||||||||| ||| || | || ||| Sbjct 1264390 ACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCC 1264331 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || ||||||||||| | ||| ||||| | ||| | ||||| |||| | | Sbjct 1264330 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTT-CTTTGTCTTG 1264272 Query 44249 ATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || ||| || | || | ||||| || | | ||| || || | ||||| || || Sbjct 1264271 AATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 1264212 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || || ||||| |||||||| Sbjct 1264211 TCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| || |||||||||| || || | || || ||||| || ||||||||| Sbjct 1263460 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAGCTGTTTACCGGCAAAG 1263401 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGT 44265 |||| | ||| ||||| | || | ||||| |||| | | | || ||| || | | Sbjct 1263400 ATCAGTCTCTGTTGATCAGGTGGAATACCTT-CTTTGTCTTGAATTTTTGCTTTTACATT 1263342 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | ||||| || | | ||| || || | ||||| || |||||||| || || || || Sbjct 1263341 TTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGTAAGAGTTTTGAC 1263282 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 1263281 GAAAATTTGCAT 1263270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979734271927