Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq2087 100 4e-16 seq3 86.0 8e-12 >seq2087 Length=947496 Score = 100 bits (110), Expect = 4e-16 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331 ||||||||||||||| || || || || || || | || | |||||| | |||||| Sbjct 545363 AGCCATTAATGTTTTTCCTGTTCCTGGTGGACCATAAAGTAAAATTCCTTTCACATGTTT 545304 Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391 |||||| |||| | | || ||| |||| || || ||||| || ||||| || Sbjct 545303 ACAACCCAATTGTGTAACAATCTCTGGTGGAAAAACTCGTGATGCAAAGGCCCTTCGGAA 545244 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAATTT-- 156449 ||| || |||||||||||||||||| || | ||||||| | ||||| ||||| | Sbjct 545243 AATAGCAGTAAATTCTTTATCCAATCCACCAATTCCCATTTTTTGAAAATCCCAATCTGG 545184 Query 156450 ATAGATATTTGA 156461 || |||| |||| Sbjct 545183 ATTGATAATTGA 545172 >seq3 Length=676877 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 50619 ATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAAACCGTTTTACCTCCGTGTCAT 50678 ||| ||||||| || |||||||||| ||||| ||| | ||||||||| |||||| Sbjct 624451 ATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGTCAT 624392 Query 50679 GTTTTATGTCAATTTTATGCCACAGACAATGTTTTATCCTGTCAATGTTATCAAAGATCA 50738 ||| ||||||||||| | | | | ||||| || ||| |||||||||| Sbjct 624391 TGTTTCGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTTTATCAAAGAAGT 624332 Query 50739 GCTGATATGGGTTTAGGCGTTCCTTTCAACGTAGCTTCTTACGCTTTATTAA 50790 || ||||||||| | || || || || || | || ||||| |||| |||| Sbjct 624331 GCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTGTTAA 624280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667054929252360