Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2209 188 2e-42 seq1766 176 1e-38 seq2021 122 2e-22 >seq2209 Length=4115427 Score = 188 bits (208), Expect = 2e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| ||||| || || || ||| |||||| Sbjct 648651 CAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTCAGAC 648592 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||||||||||||||| ||||| ||||||||| Sbjct 648591 ACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCAGCAA 648532 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||||| ||||||||||| ||||| | |||||||| | Sbjct 648531 CGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAATATT 648472 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| ||||| ||| | || |||||||| ||| Sbjct 648471 CAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGA 648433 Score = 181 bits (200), Expect = 3e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||||||||| |||||||| ||||| || || || ||| ||||| Sbjct 664300 CAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAGAT 664241 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| || ||||||||||| ||||| || |||||| Sbjct 664240 ACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCAGCAA 664181 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || |||||||| || ||||||||||| || || | ||||| || | Sbjct 664180 CGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAATATT 664121 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| || || ||||| || |||||||| Sbjct 664120 CAAAAAGAATCTACTCTTCATCTGGTATTGAGACT 664086 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||||||||| |||||||| ||||| || || || ||| ||||| Sbjct 664072 CAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAGAT 664013 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| || ||||||||||| || || || || ||| Sbjct 664012 ACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAACAA 663953 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || |||||||| || || || | |||||||| || Sbjct 663952 CGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATATC 663893 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| ||||| ||| | || |||||||| ||| Sbjct 663892 CAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGA 663854 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||||||||| || || || || ||| | || || ||| |||||| Sbjct 648423 CAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCAGAC 648364 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||| || ||||||||||| ||||| || || ||| Sbjct 648363 ACAATAGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAACAA 648304 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || ||||||||||| |||||| | |||||||| | Sbjct 648303 CGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAATATT 648244 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| ||||| || | || |||||||| Sbjct 648243 CAGAAAGAATCTACACTTCACTTAGTGTTGAGACT 648209 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||||||||| || || || || ||| | || || ||| ||||| Sbjct 663844 CAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCAGAT 663785 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| |||||||| || ||||||||||| ||||| || |||||| Sbjct 663784 ACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAA 663725 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || ||||| || |||||||| || || || | |||||||| | Sbjct 663724 CGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATATT 663665 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| || || || ||||| || |||||||| Sbjct 663664 CAGAAAGAGTCTACTCTTCATCTAGTATTGAGACT 663630 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || ||||| || || || || || || ||| || || Sbjct 663616 CAAATTTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGAT 663557 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||| || ||||||||||| ||||| || |||||| Sbjct 663556 ACAATAGAAAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAA 663497 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || |||||||| || |||||||||||||| || ||||| || | Sbjct 663496 CGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTCTTAGATTACAATATT 663437 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| ||| |||| | || |||||||| Sbjct 663436 CAGAAAGAATCTACATTGCACTTGGTATTGAGACT 663402 Score = 141 bits (156), Expect = 2e-28 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || || ||| | ||||||||||| |||||| | || || ||| Sbjct 648885 AAAATGC---AGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAA 648829 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| || ||||| || ||| |||||||| || ||||| ||||| || || Sbjct 648828 GCTTCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCA 648769 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || || || ||||| || |||||||| || || || | ||| Sbjct 648768 GATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGAT 648709 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | || ||||| || || || ||||| || |||||||| Sbjct 648708 TATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACT 648665 >seq1766 Length=1490156 Score = 176 bits (194), Expect = 1e-38 Identities = 163/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || |||||||| || || || || || ||| || || Sbjct 1263273 CAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGAT 1263332 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||| ||||| ||||||||||| || || || || || || Sbjct 1263333 ACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAACAG 1263392 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||||| |||||||| |||||||| | |||||| ||||||| || | Sbjct 1263393 AGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAATATT 1263452 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||||||||| || ||||||||| Sbjct 1263453 CAAAAAGAATCAACCCTCCATCTTGTT 1263479 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| ||||| |||||||| || || | || || ||| ||||| Sbjct 1263045 CAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCAGAT 1263104 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || |||||||| |||||||| || ||||| || || || Sbjct 1263105 ACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCAACAG 1263164 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| |||||| | |||||||| | |||||| ||||||| || | Sbjct 1263165 AGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAATATT 1263224 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||| ||||||||||| |||| Sbjct 1263225 CAAAAAGAATCTACACTTCATCTTGTTTTACGACT 1263259 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| |||||||| || || || | || || ||| || || Sbjct 1263957 CAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTCCGAT 1264016 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 1264017 ACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAG 1264076 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | |||||||| | |||||| ||||||| || | Sbjct 1264077 AGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAATATT 1264136 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||||||||||||| || |||||||||||| |||| Sbjct 1264137 CAAAAAGAATCAACCCTCCATCTTGTTTTGCGACT 1264171 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| || |||||||| || || || || || ||| || || Sbjct 1264185 CAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGAT 1264244 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||| ||||| ||||||||||| || ||||| || || || Sbjct 1264245 ACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAG 1264304 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | ||||||||| | || ||| ||||||| || | Sbjct 1264305 AGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTACAATATT 1264364 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || ||||| Sbjct 1264365 CAAAAAGAATCGACTCTTCACCTTGT 1264390 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || |||||||| || || | ||||| ||| || || Sbjct 1263501 CAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCTGAT 1263560 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || || || || || ||||| || |||||| Sbjct 1263561 ACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCAGCAA 1263620 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||||| |||||||| | |||||| |||||||||| | Sbjct 1263621 AGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAATATT 1263680 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||||||||| ||| | || ||| Sbjct 1263681 CAAAAAGAATCAACACTACATTTAGTATTG 1263710 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || |||||||| ||||| | ||||| ||| || || Sbjct 1263729 CAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATCTGAT 1263788 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || || || || || || || || |||||| Sbjct 1263789 ACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCCCCAGATCAGCAA 1263848 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||||| |||||||| | || ||| | |||||||| | Sbjct 1263849 AGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAATATT 1263908 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||| || ||||| ||| | || ||| Sbjct 1263909 CAAAAAGAGTCGACACTACATTTAGTATTG 1263938 >seq2021 Length=1035722 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||||||| | || || ||||| ||||| || || || ||| ||||| Sbjct 239389 CAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCAGAT 239330 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||| ||||||||||| || || || |||||| Sbjct 239329 ACTATAGAAAATGTGAAAGCTAAAATTCAGGATAAAGAAGGAATACCACCTGATCAGCAA 239270 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| || | ||||||||| | ||| | | || ||||| | Sbjct 239269 CGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTATAATATT 239210 Query 178104 CAAAAAG 178110 ||||||| Sbjct 239209 CAAAAAG 239203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203693707158614