Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq50 104 2e-17 >seq50 Length=3512070 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || |||||||| | ||| ||||||||||| || | || || ||||| | ||| Sbjct 996446 ATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 996505 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || |||||||| || || ||||| | |||||||||||| ||||||||| | || Sbjct 996506 AAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 996565 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 |||||||| ||||| || ||| || |||||||| || || | || || |||| | Sbjct 996566 TTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 996625 Query 16652 TTTTC 16656 ||||| Sbjct 996626 TTTTC 996630 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 16027 AACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT 16086 || |||||||||||| |||||||| |||||||||||||| | | || || || ||||| Sbjct 995816 AAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTAT 995875 Query 16087 AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAAT 16146 | | || || | || | ||| ||||||| |||||| || || || || ||||| Sbjct 995876 CATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCAATTTTGACAGCATCCTTAAT 995935 Query 16147 GATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 || ||| ||||| ||| ||| | || | |||||| ||||||| ||| || Sbjct 995936 AATTGATGTGACTCGTTCAGAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGC 995995 Query 16207 GAAGTCGCAATGTAGTCC 16224 || || ||||||| ||| Sbjct 995996 AAAATCACAATGTAATCC 996013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511388573572800