Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4 132 3e-26 >seq4 Length=912327 Score = 132 bits (146), Expect = 3e-26 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||||||| |||||||| | | |||||||| ||| || ||||| ||||| ||| Sbjct 866807 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 866748 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAA 102124 |||||||| | ||| || | ||||||||| || || || ||||||| |||||| Sbjct 866747 AATCCATAAATAGGACCTAAATCTCCTTCTTCCCTATCTGTAAAACCACAAGAATCTAAG 866688 Query 102125 AATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAG-CTCTTTGCT 102183 || | || | ||| ||||||||||| || || | | | ||| ||||||| Sbjct 866687 AACTCACGTGAACTATTTGCATCCCAAATATGAACATCTTTTTCGCTTAGTTTCTTTGC- 866629 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 | || |||||| | |||||||| |||| ||| || || |||||| |||||||||| | Sbjct 866628 ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATACGCG 866569 Query 102244 CTTAGTAGTTAAAAGTGGAAAT 102265 || |||||||| | ||||||| Sbjct 866568 TTTTGTAGTTAATAATGGAAAT 866547 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 || |||| | |||||| ||||| |||||||| || || | |||||||| || || Sbjct 867122 AAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCACTTC 867063 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGAC 101891 ||||||| ||||| || || | | | ||| | |||||||||||| || ||||| Sbjct 867062 TTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAACAAAACAATGAC 867003 Query 101892 AAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTC 101951 |||| || || ||||||| ||||| || |||||| || ||||| || |||| Sbjct 867002 AAGGAGGTAAAGCCATTTTTGGAATATCGATTGGATTCCATGCTGTCATTATAATTCTTC 866943 Query 101952 TATC 101955 |||| Sbjct 866942 TATC 866939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361233412894040