Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq50 161 1e-34 seq43 159 4e-34 >seq50 Length=3512070 Score = 161 bits (178), Expect = 1e-34 Identities = 162/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 ||||||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || |||||||| | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 24585 TCGTCTGG-TGTTAGTTTATTCCAATCA 24611 || |||| |||| |||||||||||| Sbjct 996629 TC-ACTGGCAGTTAAATTATTCCAATCA 996655 Score = 125 bits (138), Expect = 8e-24 Identities = 106/128 (83%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 ||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGG 24737 ||| || ||| | ||||||| ||||||| |||||||||| |||||||| || ||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAA-T 996853 Query 24738 ATTGGTTC 24745 | |||||| Sbjct 996854 AATGGTTC 996861 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||| | ||| ||| ||| || ||||| ||||| || || | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || || | || || ||| ||||||||| ||||||||||| ||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 24333 ||| | | ||| | || || || ||||| |||||| ||| ||||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 | || ||| ||||| |||| | || ||||| ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 23941 TTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA 24000 ||||| | || ||||| || ||||||||||| ||||| || |||||| ||| | Sbjct 995797 TTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAA 995856 Query 24001 TTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 24060 || ||| ||||| ||||| | || ||| || | || | || | |||||||||||||| Sbjct 995857 GTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCAA 995916 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAA 24118 | ||| || || | ||||| ||| | ||| ||| | || | |||||| Sbjct 995917 TTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTTTGTACAAT-- 995974 Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 995975 GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| |||||| |||||| ||||| ||||| |||||| || || || || |||||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 ||| || |||| |||||||||||| | ||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 >seq43 Length=2749190 Score = 159 bits (176), Expect = 4e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116 || ||||| ||| || | | ||||| ||| || || || |||||||| | | ||| Sbjct 1504428 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTT 1504487 Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 1504488 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 1504547 Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236 | || || ||||| ||||| || ||||| | ||| ||||||||||| |||||||| ||| Sbjct 1504548 CTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCA 1504607 Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 1504608 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 1504650 Score = 143 bits (158), Expect = 3e-29 Identities = 225/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 ||||| | | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || || ||||| | ||||||||| | |||||| ||| ||||| || || || ||| | Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1506633 Query 54275 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331 | || || || |||||| | || | | || || || || || || ||| Sbjct 1506634 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 1506692 Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 54390 || | ||| |||| |||||| || ||||| || || || |||||||| || ||| |||| Sbjct 1506693 ATGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 1506752 Query 54391 AAGTAGAAAACAGCT 54405 || || ||||||||| Sbjct 1506753 AA-TAAAAAACAGCT 1506766 Score = 131 bits (144), Expect = 2e-25 Identities = 223/321 (69%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||||||||| ||| || ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 ||| |||||||| | ||| || | | |||||| |||| || | | ||||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 1505193 Query 53667 GAAAATCAAATTGTCCATCTA------TTACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||||||||| | || | |||||||||| || | ||||| || || | || Sbjct 1505194 GAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 1505253 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 1505254 TACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 1505313 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 || || ||||||| |||||| ||||| || ||||| ||| |||||||| | Sbjct 1505314 TTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCA 1505373 Query 53841 TGAATGGCGTACCAGTTTCAA 53861 | |||| || || ||||||| Sbjct 1505374 TATATGGAGTTCCTGTTTCAA 1505394 Score = 105 bits (116), Expect = 8e-18 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||||||| | |||||| || | |||||||||| |||| |||||| |||||| | Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 | ||||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 1505831 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||| || || |||| |||| | ||||| ||||||||||| || ||||| ||| Sbjct 1504842 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCA 1504901 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 1504902 CCATAATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 1504961 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 1504962 GGATAGCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 54643 | || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 54644 TAAATAAT 54651 ||||| || Sbjct 1507070 TAAATTAT 1507077 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 1504159 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 1504218 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||||| |||||| || || || || | ||||| |||||||||| || | | Sbjct 1504219 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 1504278 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAA 53024 ||||||| |||||||||| |||||||||| Sbjct 1504279 TTTGTGGTATTTCCCAAACTGTTTTATAAA 1504308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593691617059200