Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 >seq4 Length=912327 Score = 134 bits (148), Expect = 1e-26 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 97369 CCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGG 97428 ||||||||| ||||| | | | | ||| |||| ||| |||||||| |||||||| Sbjct 866807 CCTTCTCCATTATAATCTTTGTACATATCTTTATATGTTGCACCAAAATGTCTCCATTGA 866748 Query 97429 AATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAA 97488 |||||||||| ||| || | ||||||||||| ||||| |||||| |||||| Sbjct 866747 AATCCATAAATAGGACCTAAATCTCCTTCTTCCCTATCTGTAAAACCACAAGAATCTAAG 866688 Query 97489 TAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAG-CTCTTTGCT 97547 | | || | ||||||||||||||| || ||| | | | || ||||||| Sbjct 866687 AACTCACGTGAACTATTTGCATCCCAAATATGAACATCTTTTTCGCTTAGTTTCTTTGC- 866629 Query 97548 GTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCT 97607 | || |||||| | |||||||| |||||||| ||||| |||||| |||||||||| | Sbjct 866628 ATTTGTGGATCCTTTAATAAACCATAACAATTCCTCCACTACACCTTTCCAAAATACGCG 866569 Query 97608 CTTAGTTGTTAAGAGAGGAAA 97628 || || ||||| | ||||| Sbjct 866568 TTTTGTAGTTAATAATGGAAA 866548 Score = 95.1 bits (104), Expect = 8e-15 Identities = 169/242 (70%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 ||| || |||| | |||||| ||||| ||||| || || || || |||||||| || Sbjct 867126 ATATAAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCA 867067 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA 97251 ||||||||| | || || || | | | ||| | |||||||| ||| ||| ||| Sbjct 867066 CTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTACATAAAATTGAA-CAAAACA 867008 Query 97252 -TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACAT 97310 ||||| || || || ||||||||||||| ||| | |||||| || ||| | || Sbjct 867007 ATGACAAGGAGGTAAAGCCATTTTTGGAATATCGATTGGATTCCATGCTGTCATTATAAT 866948 Query 97311 TCTTCTATCGGTTGGGTTTGTGT-GTATGGTATTAATTATCTGCTTTAATTGATCAANNC 97369 ||||||||| ||||| | | |||| ||| || | | ||||||||||||| | Sbjct 866947 TCTTCTATC-ATTGGGAGAATATCGTATCTTATCTATAACTTCTTTTAATTGATCAATAC 866889 Query 97370 CT 97371 || Sbjct 866888 CT 866887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346766925222800