Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq108 111 1e-19 seq2544 109 5e-19 seq31 105 6e-18 >seq108 Length=811940 Score = 111 bits (122), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTAT 118584 ||| || || || | ||| |||||||||||||| || ||||| | | || || || || Sbjct 251208 CAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAAT-GTACGTCCAT 251266 Query 118585 CCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT 118644 | || || ||||| ||||| |||| | | |||||||| || || || || ||||||| Sbjct 251267 CTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGT 251326 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCG 118704 || |||||| ||| || | ||| | ||| || | | ||| ||||| | || | | Sbjct 251327 CTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAGTTATTG 251386 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || |||| ||||| ||||| ||||||||| Sbjct 251387 TTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 251421 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| || | || | |||||| ||||||||||| || ||||| Sbjct 250964 TACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAG 251023 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || | ||||||||||| | || | | ||| |||||||||| Sbjct 251024 AAAGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAG 251083 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || || |||||| |||||| | ||| | ||| || | ||| || Sbjct 251084 GAATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCT-TCA 251142 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 251143 ACTTCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCAT 251192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || ||||||||||| || |||| | | |||| ||| ||| || | ||||||| Sbjct 249029 GTCGATTCTTTTTGAATATTATAAT--CAGAAAGTGTACGTCCATCTTCCAATTGTTTTC 249086 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| |||| | | ||| ||||| ||||| || || || |||||| ||||||| || Sbjct 249087 CAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTT 249146 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | ||||| | ||| || || || | || | ||||| || || ||| Sbjct 249147 TTACATTTTCAATTGTGTCGGAAGCT-TCAACTTCAAGAGTAATAGTTTTACCCGTGAGA 249205 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || |||||||| ||||| Sbjct 249206 GTCTTGACAAAAATTTGCAT 249225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || ||| || | || | |||||| ||||||||||| ||||||||| Sbjct 249453 TACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGG 249512 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | |||||| ||||| |||| || | ||| || || || | Sbjct 249513 AAAGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCG 249572 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTC 118669 | || || || |||||| ||||||| ||| || | ||| Sbjct 249573 GAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTC 249612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| ||||||||| | ||| || ||| || | ||| Sbjct 250762 TGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGT 250821 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 |||||||| |||| | | ||| || || ||||| || || || |||||| ||| || Sbjct 250822 TTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTG 250881 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | ||| | ||| || | ||| || || || | || | || || || || Sbjct 250882 GCTTTTACATTTTCAATGGTATCGGAAGCT-TCAACTTCAAGAGTAATAGTCTTTCCCGT 250940 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || ||||| ||||| Sbjct 250941 AAGAGTTTTGACGAAAATTTGCAT 250964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | ||| || ||||||||||| || ||||| | || || ||| Sbjct 250524 CAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATC 250583 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| ||||| | || | | ||| ||||||||||| || || || || || Sbjct 250584 TTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATC 250643 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 |||||| ||||| | ||| | || || | |||| || || || | || | | Sbjct 250644 CTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCT-TCAACTTCTAAAGTAATAG 250702 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || ||||| || || ||||| ||||| Sbjct 250703 TTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 >seq2544 Length=277 Score = 109 bits (120), Expect = 5e-19 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | |||||| ||||||||||| ||||||||| | ||| || ||| || | Sbjct 263 CAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCA 204 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || ||||| |||| || | ||| ||||| ||||| || || ||||| ||| || Sbjct 203 ACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTATCTTGAA 144 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| |||||| | ||| | || || | ||| || || || | || | ||||| Sbjct 143 TTTTAGTTTTAACATTTTCAATTGTATCAGAAGCT-TCAACTTCTAAAGTAATTGTTTTT 85 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| || ||||| Sbjct 84 CCAGTAAGAGTTTTTACAAATATTTGCAT 56 >seq31 Length=1439309 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| |||||||| | |||||| |||||||| || |||||||| | Sbjct 960531 CCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATC--TA 960588 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| | || | || |||||||| |||| Sbjct 960589 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAG 960648 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||| || ||| || | || | || |||| ||| || Sbjct 960649 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCT-TCA 960707 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || || || |||||||| ||||| || ||||| Sbjct 960708 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| ||||| || | ||||| ||||| ||||| || ||||| | Sbjct 961508 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATC--TG 961565 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| |||| | || |||||||| |||| Sbjct 961566 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 961625 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||| || || || | || | || || | ||| || Sbjct 961626 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCT-TCA 961684 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || | || | ||||| || || || ||||| ||||||||||||||| Sbjct 961685 ACTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATG 961735 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | |||||| ||||| || | ||||| ||||| ||||| || ||||| | Sbjct 960987 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATC--TG 961044 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | ||| || || ||||||||||| | || | ||||||||||| |||| Sbjct 961045 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAG 961104 Query 118630 GTATGCCCTCCTTGTCTGTAATTTT 118654 | || || || || ||| |||||| Sbjct 961105 GAATTCCTTCTTTATCTTGAATTTT 961129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809039275680