Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24]
4,040 sequences; 230,340,171 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq69 131 3e-25
seq348 122 2e-22
>seq69
Length=3598413
Score = 131 bits (144), Expect = 3e-25
Identities = 194/270 (72%), Gaps = 5/270 (2%)
Strand=Plus/Plus
Query 135593 TTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATA 135652
||||| | |||| || || ||| || | ||| || | | | |||||||| |||||||
Sbjct 701928 TTTAT-CTGATACAGTGGAATGGGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATA 701986
Query 135653 TAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTA 135711
| || |||| || |||||| ||| | ||| | || || || ||| || ||||| |
Sbjct 701987 TTGAT-TTAGTGAAATGGGCTGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTT 702045
Query 135712 GCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGAT 135771
| |||||||||| ||||||||| |||||| || | || | | ||| | | |||||||||
Sbjct 702046 GGTAAAATAGCTAGTGGTATATGTGATAATATATTAACTTGTGTTGCACGTGCCTGGGAT 702105
Query 135772 ACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATT 135831
|| || || | | || |||||||| |||||||| ||||||||||||||| ||
Sbjct 702106 CCATTAAAGCCTTTGGTCTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTT 702165
Query 135832 ACAGAAAAACATATAGATACGTTAAAATAT 135861
|| | || ||| | ||| |||| |||||
Sbjct 702166 ACTGCAACACAGGT--ATATGTTATAATAT 702193
>seq348
Length=983679
Score = 122 bits (134), Expect = 2e-22
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454
||||| |||||||||| | || || | ||||| | |||||||||||| | | |||
Sbjct 639896 AGAAAATATATATATTTTTTAAATCATTTGGAAAATTCAGAAACTCATGATGATTTGTGG 639837
Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514
|| || | |||| || ||||| | | |||||| |||||| | |||||| ||||||||
Sbjct 639836 AATGCATGTCAAAATCAAATGGTAACAATAGGAAAGATGCATGGGTTTTTAAGAATGTAT 639777
Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATC 189574
||||| ||||| ||| | ||||||||| ||| |||||| ||||| | | |
Sbjct 639776 TGGGCAAAGAAAATATTAGAATGGACTGAAACTCCTGAAATTGCTTTAAAATGGGCCAAT 639717
Query 189575 TATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTT 189629
||||| || || ||||| |||| || |||||||| || || |||||||
Sbjct 639716 TATTTAAATAATAAGTATAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGTT 639662
Score = 89.7 bits (98), Expect = 9e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683
||||||||||||||||||| || || | || ||| | ||| ||||||| ||||
Sbjct 639567 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 639508
Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743
||||||| || ||||||||||||||||| ||| ||| |||||| | |||||| ||
Sbjct 639507 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAACATTGCTGAAT 639448
Query 189744 TT 189745
||
Sbjct 639447 TT 639446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923150178561600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |