Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq69 131 3e-25 seq348 122 2e-22 >seq69 Length=3598413 Score = 131 bits (144), Expect = 3e-25 Identities = 194/270 (72%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 135593 TTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATA 135652 ||||| | |||| || || ||| || | ||| || | | | |||||||| ||||||| Sbjct 701928 TTTAT-CTGATACAGTGGAATGGGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATA 701986 Query 135653 TAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTA 135711 | || |||| || |||||| ||| | ||| | || || || ||| || ||||| | Sbjct 701987 TTGAT-TTAGTGAAATGGGCTGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTT 702045 Query 135712 GCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGAT 135771 | |||||||||| ||||||||| |||||| || | || | | ||| | | ||||||||| Sbjct 702046 GGTAAAATAGCTAGTGGTATATGTGATAATATATTAACTTGTGTTGCACGTGCCTGGGAT 702105 Query 135772 ACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATT 135831 || || || | | || |||||||| |||||||| ||||||||||||||| || Sbjct 702106 CCATTAAAGCCTTTGGTCTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTT 702165 Query 135832 ACAGAAAAACATATAGATACGTTAAAATAT 135861 || | || ||| | ||| |||| ||||| Sbjct 702166 ACTGCAACACAGGT--ATATGTTATAATAT 702193 >seq348 Length=983679 Score = 122 bits (134), Expect = 2e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 189395 AGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGG 189454 ||||| |||||||||| | || || | ||||| | |||||||||||| | | ||| Sbjct 639896 AGAAAATATATATATTTTTTAAATCATTTGGAAAATTCAGAAACTCATGATGATTTGTGG 639837 Query 189455 AACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAT 189514 || || | |||| || ||||| | | |||||| |||||| | |||||| |||||||| Sbjct 639836 AATGCATGTCAAAATCAAATGGTAACAATAGGAAAGATGCATGGGTTTTTAAGAATGTAT 639777 Query 189515 TGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAGTATC 189574 ||||| ||||| ||| | ||||||||| ||| |||||| ||||| | | | Sbjct 639776 TGGGCAAAGAAAATATTAGAATGGACTGAAACTCCTGAAATTGCTTTAAAATGGGCCAAT 639717 Query 189575 TATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTT 189629 ||||| || || ||||| |||| || |||||||| || || ||||||| Sbjct 639716 TATTTAAATAATAAGTATAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGTT 639662 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 ||||||||||||||||||| || || | || ||| | ||| ||||||| |||| Sbjct 639567 TAGGTTGTATGTGGTCTATCTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 639508 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 ||||||| || ||||||||||||||||| ||| ||| |||||| | |||||| || Sbjct 639507 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAACATTGCTGAAT 639448 Query 189744 TT 189745 || Sbjct 639447 TT 639446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923150178561600