Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq199 113 5e-20 seq663 109 6e-19 seq873 105 8e-18 seq99 96.9 4e-15 seq362 91.5 2e-13 seq438 89.7 6e-13 seq555 86.0 7e-12 seq108 86.0 7e-12 >seq199 Length=2136992 Score = 113 bits (124), Expect = 5e-20 Identities = 76/84 (90%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60056 GAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 2094335 GAAAAATAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2094276 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 2094275 TACTAACCACTATACTACCGAGGA 2094252 >seq663 Length=487541 Score = 109 bits (120), Expect = 6e-19 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 194865 AAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 194922 Query 60117 TCACCACTATACTACCGAGGATTGAATAT 60145 | ||||||||||||||||||| | |||| Sbjct 194923 TGACCACTATACTACCGAGGAATCTATAT 194951 >seq873 Length=219276 Score = 105 bits (116), Expect = 8e-18 Identities = 75/86 (87%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 60057 AAAAATTT-----TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 167984 AAAAATTTAGATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 168043 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 ||||| ||||||||||||||||||| Sbjct 168044 GATACTGACCACTATACTACCGAGGA 168069 >seq99 Length=495943 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 26117 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 26176 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 26177 TAACCACTATACTATCGAGGA 26197 >seq362 Length=546631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 60057 AAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 211802 AAAAATTATTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 211861 Query 60116 CTCACCACTATA 60127 || ||||||||| Sbjct 211862 CTAACCACTATA 211873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 212646 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 212705 Query 60126 TAC 60128 ||| Sbjct 212706 TAC 212708 >seq438 Length=261999 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 65461 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAG 65402 Query 60136 GA 60137 || Sbjct 65401 GA 65400 >seq555 Length=231301 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 60057 AAAAATTT-TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | ||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 172936 AAAAATATATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 172995 Query 60116 CTCACCACTATA 60127 || ||||||||| Sbjct 172996 CTAACCACTATA 173007 >seq108 Length=811940 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 250509 TCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGA 250568 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| |||||||| || || | || ||| || |||| || Sbjct 250569 AAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGG 250628 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || || ||| ||| |||| || || | | | | || ||| | ||| | Sbjct 250629 AATACCTTCTTTATCC-TGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAA 250687 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || ||||| || || || ||||| || || |||||||| Sbjct 250688 CTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571788723211200