Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq31 174 2e-38 seq108 131 2e-25 seq65 120 5e-22 seq2544 111 2e-19 seq1683 107 3e-18 seq628 107 3e-18 seq87 102 1e-16 seq296 96.9 5e-15 >seq31 Length=1439309 Score = 174 bits (192), Expect = 2e-38 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| |||||| ||||||||||| | |||||||||||| ||||||||||||| Sbjct 961506 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961565 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | ||| || | ||||||||||||||| ||||||| ||||||||| |||| Sbjct 961566 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 961625 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||||||||||||||| ||||||||| ||| | Sbjct 961626 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAA 961685 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| ||||| || |||| ||||||| || || ||||| Sbjct 961686 CTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 961734 Score = 165 bits (182), Expect = 1e-35 Identities = 120/139 (86%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| |||||| ||||||||||| | |||||||||||| ||||||||||||| Sbjct 960985 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961044 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | ||| || | ||||||||||||||||||||||| |||||||| |||| Sbjct 961045 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAG 961104 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 961105 GAATTCCTTCTTTATCTTG 961123 Score = 150 bits (166), Expect = 3e-31 Identities = 116/138 (84%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| |||| |||||| |||||||| || | ||||||||||| ||||| |||||| | Sbjct 960530 TCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 960589 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| || | ||||||||||||||||||||||| ||||||||| ||||| Sbjct 960590 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 960649 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||||||||| Sbjct 960650 AATTCCTTCTTTATCTTG 960667 Score = 147 bits (162), Expect = 3e-30 Identities = 116/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| |||||| ||||||||||| | |||||||||||| ||||||||||||| Sbjct 961278 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961337 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | ||| |||| |||||| |||||||||||||| | ||| || || || | Sbjct 961338 AGAGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGG 961397 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| ||||| Sbjct 961398 GAATTCCTTCTTTGTCTTG 961416 Score = 138 bits (152), Expect = 2e-27 Identities = 171/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | |||||||||||| |||||||||||||| || ||||| | ||| || | ||| Sbjct 964779 ATGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTG 964838 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNN 146193 |||||||||||||||||| | ||| ||||| || |||||||| ||||||||||| Sbjct 964839 TTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTT 964898 Query 146194 NNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGT 146253 || |||||| ||| ||||||| ||||| ||||| ||||| Sbjct 964899 AGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGT 964958 Query 146254 TAATGTTTTAATGAATATTTGCA-TTTTAT-TAGAAAAATATTTGTTaaaaaaaaTAAT 146310 ||| || |||| || || |||| |||||| |||||| || | |||||||| ||| Sbjct 964959 TAAAGTCTTAACAAAGATCTGCATTTTTATGTAGAAACCTA----TAAAAAAAAACAAT 965013 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| ||||||| ||| | |||||||||||| ||||||||||| | Sbjct 960757 TTCCTCCGCGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAG 960816 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | ||| || | ||||| |||||||||||||| | ||| ||||| |||| Sbjct 960817 AGAGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAG 960876 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 960877 GAATTCCTTCTTTATCTTG 960895 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| |||||| || || | || | ||||||||||| || |||||||||| Sbjct 964092 TTCCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTG 964151 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| || || | ||| ||||| |||| Sbjct 964152 AAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAG 964211 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 964212 GAATTCCTTCTTTATCTTG 964230 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| || || ||||| | |||||||| || |||||||||||||| Sbjct 964322 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 964381 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||| ||||| |||||||||||||| | ||| || || || ||| Sbjct 964382 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 964441 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 964442 ATTCCTTCTTTGTCTTG 964458 >seq108 Length=811940 Score = 131 bits (144), Expect = 2e-25 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | ||||||||||| ||||||||||| ||| Sbjct 250966 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAA 251025 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || |||||||||||||||||||||||||| || ||||| |||||| Sbjct 251026 AGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 251085 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||||||||| || ||||||||| ||| ||| Sbjct 251086 ATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACT 251145 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || || ||||| || || | |||||| | || ||||||||| Sbjct 251146 TCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCATT 251193 Score = 123 bits (136), Expect = 4e-23 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | ||||| ||||||| || |||||||| ||||||||||| | Sbjct 250508 TTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCG 250567 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | | ||| || | ||||| ||||||||||||||||| || ||||| |||| Sbjct 250568 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAG 250627 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||||||||| || |||||| || ||| | Sbjct 250628 GAATACCTTCTTTATCCTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAA 250687 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| || || ||||| ||||| | || |||| ||| |||||||| Sbjct 250688 CTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 123 bits (136), Expect = 4e-23 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | ||||| ||||||| || || ||||| ||||||||||| | Sbjct 251192 TTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAG 251251 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| |||| |||||| |||||||| ||||||||||||||||| || | Sbjct 251252 ATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTG 251311 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||| || ||||| |||||||| |||| Sbjct 251312 GAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTA 251371 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || || |||||||||||||| |||||||| | || || ||||| Sbjct 251372 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 251420 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | || |||||||| ||||| ||||| ||| Sbjct 250738 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 250797 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || ||||||||||||||||| |||||||| || || || |||||| Sbjct 250798 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 250857 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 250858 ATACCTTCTTTGTCTTG 250874 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | | ||| | || | ||| |||||||| ||||||||||| ||| Sbjct 248999 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAA 249058 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||||||||||||||| |||||||| || ||||| |||||| Sbjct 249059 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 249118 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 249119 ATACCTTCTTTGTCTTG 249135 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | ||||||||||| ||||||||||| ||| Sbjct 249227 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAA 249286 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || ||||| |||||||| |||| ||| || || || || ||| Sbjct 249287 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249346 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 249347 ATACCTTCTTTGTCTTG 249363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || | ||| | ||||||||||| ||||| ||||| ||| Sbjct 249455 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 249514 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || ||||| |||||||| |||| ||| || || || || ||| Sbjct 249515 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249574 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 249575 ATACCTTCTTTGTCTTG 249591 >seq65 Length=484858 Score = 120 bits (132), Expect = 5e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | | || |||||||||||| |||||||| || ||||||||||||||| Sbjct 17077 CCACCCCTTAAACGTAGTACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 17018 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | ||| || ||||||||||||||||| || |||||||| ||| | || ||| Sbjct 17017 AGTGTCCTACCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGACCAGGTGGA 16958 Query 146171 ATTCCT 146176 |||||| Sbjct 16957 ATTCCT 16952 >seq2544 Length=277 Score = 111 bits (122), Expect = 2e-19 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCT 146118 ||||| || || | ||| | ||||||||||| ||||| ||||| |||||||| | Sbjct 274 AAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACG 215 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 || ||| || || || || |||||||| |||| ||| || |||||||||||||| ||||| Sbjct 214 GCCATCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTC 155 Query 146179 TTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGT 146238 |||||||| ||||| ||| ||| ||||||| || Sbjct 154 CTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGT 95 Query 146239 GATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||||| || || | ||||| | ||||||||||| Sbjct 94 AATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 >seq1683 Length=220 Score = 107 bits (118), Expect = 3e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCT 146118 ||||| || || | ||| | ||||||||||| ||||||||||| |||||||| | Sbjct 217 AAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGTACG 158 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 | ||| || | ||||| |||||||||||||||||||| || || || ||||| ||||| Sbjct 157 ACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCTTC 98 Query 146179 TTTATCTTG 146187 ||| ||||| Sbjct 97 TTTGTCTTG 89 >seq628 Length=409123 Score = 107 bits (118), Expect = 3e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 23996 TTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTG 24055 ||||| |||| |||| || ||||||| || ||| | ||||||||| ||||||| ||| Sbjct 261839 TTTGA-TAAATTCTTGTCCCCTTACAAGATTTACAAATTCACATTTAGGAAACCATTTTG 261781 Query 24056 CGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAA 24115 | |||| ||||| | |||||| ||||||||| || ||| ||||||||||||| || Sbjct 261780 CATGTTCAATCCATGCATCATCTGTTGTTTCCCAATTTCGTAAGCCACCATCACAATGAA 261721 Query 24116 AGCATTTAACTTTATCACTTTTTCC-AGTATAA 24147 | ||| |||| | ||||| | ||| | ||||| Sbjct 261720 AACATCTAACATGATCACCATATCCTATTATAA 261688 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 24324 AAAACTACAATTTGGAGAAAATTTTTTATGATCAATTTCTGGTTTATCGCCTTCAACCCA 24383 ||| ||||| ||| || || ||| |||||||| ||| | || ||||| ||||| Sbjct 268093 AAATCTACATCTTGCTGACCATCTTTGATGATCAACCATTGGAATGTCACCTTCTACCCA 268034 Query 24384 TTTATTTATTTGTACTCCACAATACACACATTTAACTGTATCATTCTCACCTATATAATA 24443 || | ||| | ||| ||| | | ||| ||||| ||||| |||||| ||||||| Sbjct 268033 TTGACATATCTCAACTTGACATTCAAAGCATCTAACTTTATCACCTTCACCTGTATAATA 267974 Query 24444 AAATCCATTACTAGCAAATGATTCAGGAGTTATAAAATTTATGGGCCAATTTTCAAATGT 24503 ||||||| | |||| | |||||| |||| | || |||||||||||||| | Sbjct 267973 AAATCCAGCAGCTGCAAGTTTTTCAGGTTCTATATATGATACAGGCCAATTTTCAAAACT 267914 Query 24504 TTGTAATCTTTCAGATTCA 24522 ||| | |||| | | |||| Sbjct 267913 TTGAAGTCTTGCTGCTTCA 267895 >seq87 Length=1479609 Score = 102 bits (112), Expect = 1e-16 Identities = 127/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||| || || | ||| | | ||| |||||||| |||||||||||||| | | | Sbjct 253108 ATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATAAGACGT 253167 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || || |||||||||||||| || |||| Sbjct 253168 TGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTTCTATAGTA 253227 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| ||||||||| || ||||| |||||||| || || ||||| | ||||| ||| Sbjct 253228 TCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAATATCTGC 253287 Query 146276 AT 146277 || Sbjct 253288 AT 253289 >seq296 Length=690042 Score = 96.9 bits (106), Expect = 5e-15 Identities = 135/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 10521 TATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAAT 10580 ||||| |||||||| |||||| || | |||||||| ||||||| ||||| | | Sbjct 408416 TATAGGGGAAATGTAGGAGTAGTACTGTTTAATCACAGTAATGAACCTTTTAAAGTTTCA 408475 Query 10581 AGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAA 10640 ||||||| | ||| | |||||||| ||||||||||| |||||||| || | | || Sbjct 408476 CCAGGAGATCGTATAGCCCAATTAATTTGTGAAAAAATAATATATCCTGAACTTCAAGAA 408535 Query 10641 GTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGGTTTTGGATCTACTGGTTATAAT 10700 || |||||||| | ||| | ||| ||| || ||||| ||||| || | ||| Sbjct 408536 GTAAATAGTTTAGATAATACAGACAGAGGAGATGGAGGATTTGGTTCTACAGGAAAAAAT 408595 Query 10701 TAAGAATA 10708 ||| |||| Sbjct 408596 TAA-AATA 408602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743488851916800