Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq50 114 1e-20 >seq50 Length=3512070 Score = 114 bits (126), Expect = 1e-20 Identities = 152/205 (74%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| |||| ||| || ||||| |||| ||| ||||||||||||||||| || Sbjct 996429 TTTCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACAT 996488 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAG 16606 | ||||| || | ||||||||||| || || | || || | |||||||||||| || Sbjct 996489 TTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGAC 996548 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC-AAG 16665 | ||| | ||| | | || || || || |||||||| |||||||||||| || ||| Sbjct 996549 T-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAG 996607 Query 16666 -TATGTGTTTAATAAAAtttttttC 16689 ||| | | ||||||| |||||| Sbjct 996608 ACATGAGAT--ATAAAATGTTTTTC 996630 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||||||| | ||| | ||||||||||| ||||| || |||||||| ||||||| Sbjct 995608 TTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATG 995667 Query 16003 TTCCATAAAATCAAAAGGATTTT 16025 |||||| |||||||| ||||||| Sbjct 995668 TTCCATGAAATCAAACGGATTTT 995690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462488643144000