Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4 150 1e-31 >seq4 Length=912327 Score = 150 bits (166), Expect = 1e-31 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| ||||||||||| ||||| |||||||||||||| || || || || || ||||| Sbjct 866547 ATTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATG 866606 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAG 20162 ||||||||||||||| |||||| | | | || ||||||| ||| | |||||| Sbjct 866607 GTTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTTCATATTTGGGA 866666 Query 20163 CGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGG 20221 ||| || | || | || ||| | ||| ||| ||| | | |||| || | Sbjct 866667 TGCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGG-TTTTACAGATAGGGAAGAAGGAG 866725 Query 20222 ATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA 20281 |||| |||||| | |||||||||||||||||||||||||| || |||| || ||| Sbjct 866726 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATATGT 866785 Query 20282 ACACAAATTATTTTGGACAAGG 20303 ||| | ||||| |||| |||| Sbjct 866786 ACAAAGATTATAATGGAGAAGG 866807 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || || || ||||||||||| | || ||||| | | ||| | || ||||||| Sbjct 866933 CCCAATGATAGAAGAATTATAATGACAGCATGGAATCCAATCGATATTCCAAAAATGGCT 866992 Query 20407 TTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCA 20465 || ||||| |||||| || | || |||||||| || ||| | ||||| || || || Sbjct 866993 TTACCTCCTTGTCAT-TGTTTTGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCA 867051 Query 20466 AATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGC 20525 | | |||||| || || |||||||| || ||||| || || ||||||||| |||| | Sbjct 867052 ACTTTATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTC 867111 Query 20526 GCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 || | | ||||| | |||||| ||||| | ||||| Sbjct 867112 TTTGTTAATTTATATACTGGCACATATTACAAACTTAAA 867150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399164345177800