Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq50 111 2e-19 >seq50 Length=3512070 Score = 111 bits (122), Expect = 2e-19 Identities = 161/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || | |||||||| ||||| ||||||||||| |||| || || ||||||||| || Sbjct 995793 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 995852 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | ||| ||||| ||||| | || ||||| | | || || |||||||||| | Sbjct 995853 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 995912 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||||| || | ||||||| | | | | | ||||| || | || | Sbjct 995913 TCAATTTTGACAGCATCCT---TAATAATTGATGTGACTCGTTCAGAAGATGGTTTTTGT 995969 Query 14186 AGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | ||||| || |||||||| |||||||||||||| | |||| Sbjct 995970 ACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 111 bits (122), Expect = 2e-19 Identities = 136/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 |||| ||||| | | || ||||||||||||||| | || ||||||||| || || | Sbjct 996427 CCTT-TCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAA 996485 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-T 14572 |||||||| || | ||||||||||| ||||| | || |||| |||||| || | Sbjct 996486 CATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTT 996545 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14632 || | ||||| ||| | | ||| ||||| || || |||||| ||||||||||||||| Sbjct 996546 GACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCT 996604 Query 14633 AA 14634 || Sbjct 996605 AA 996606 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||| ||||||||| || |||||| | ||||||||| | |||| |||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||||||| || || |||||||| || |||||| || || || ||||||||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||||||| || | | || |||||||||| |||||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAATAA 996343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 || || ||| |||||||||||| | ||| |||||||||||||||| || |||||||| Sbjct 995597 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCT 995656 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATA 14002 | || |||| |||||| |||||||| |||||| |||||| Sbjct 995657 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 995698 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 14693 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACC 14752 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 996737 TTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 996796 Query 14753 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGAAT 14811 || || || || ||||||||||| |||||||| | ||| ||||||| | | Sbjct 996797 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTTCAATAA 996855 Query 14812 TGGTTC 14817 |||||| Sbjct 996856 TGGTTC 996861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482321241547200