Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2544 98.7 8e-16 seq108 98.7 8e-16 seq31 82.4 6e-11 >seq2544 Length=277 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| |||||||||||||| ||||| |||| | || | ||||||||| || Sbjct 258 TGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGC 199 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT-- 18240 || || ||| |||| ||||| ||||||||| || | ||||||||||| ||||| Sbjct 198 TTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTA 139 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| || || | | ||| || ||| | || ||| | || || |||| || | Sbjct 138 GTT--TTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAG 81 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 | | ||||||||||| |||||||| Sbjct 80 TAAGAGTTTTTACAAATATTTGCAT 56 >seq108 Length=811940 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | |||||| || |||||||||||||| || || || | Sbjct 248999 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAA 249058 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||||||| || ||| |||| | ||| |||||||| || Sbjct 249059 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 249118 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| |||| || || | | ||| ||||| | || Sbjct 249119 ATACCTTCTTTGTCTTGAATTT-TTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAAC 249177 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || |||| || || | || || |||||||||||||| Sbjct 249178 TTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| |||||||||||||| || || || | | ||| || ||||||||||||| Sbjct 250990 TGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTACGACCATCTTCCAATTGT 251049 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || | ||| |||||||| || | ||||| ||||| ||||| | Sbjct 251050 TTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAATTT-T 251108 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| || || | || ||| | || || |||| || || Sbjct 251109 AGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGT 251168 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||| ||||||||||||||| Sbjct 251169 AAGTGTTTTGACAAAAATTTGCATT 251193 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| ||||||||||| || || || |||| | || || ||||||||| ||| Sbjct 249251 TGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGTACGACCATCTTCCAACTGT 249310 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| ||||| ||||| || || | ||||| || || ||||| | Sbjct 249311 TTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTT-T 249369 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || || | | ||| | ||| | || ||||| || || |||| || || Sbjct 249370 TGCTTTTACATTTTCAATGGCATCATAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGT 249429 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || |||||||||||||| Sbjct 249430 GAGAGTCTTGACAAAAATTTGCAT 249453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| |||||||||||||| ||||| |||| | || || ||||||||| ||| Sbjct 249479 TGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCCAACTGT 249538 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| ||||| ||||| || || | ||||| || || ||||| | Sbjct 249539 TTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTT-T 249597 Query 18243 TGCTT 18247 ||||| Sbjct 249598 TGCTT 249602 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || |||||||| ||||||||||| || || || | | ||| | |||||| | |||| Sbjct 251218 TGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGT 251277 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | |||||| ||||| || | |||||||| || ||||| | Sbjct 251278 TTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTT-T 251336 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| || || || ||| || | || || |||| || || Sbjct 251337 CGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAGTTATTGTTTTACCTGT 251396 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| ||||| || ||||| Sbjct 251397 CAATGTTTTGACAAAGATCTGCAT 251420 >seq31 Length=1439309 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || ||||| | ||||| ||| ||||| ||||||||||| || ||||| || Sbjct 960530 TCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 960589 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | |||||| | |||||| || ||| | || | || ||| ||||| || Sbjct 960590 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 960649 Query 18218 CACGCCTTCCTTATC 18232 | ||||| ||||| Sbjct 960650 AATTCCTTCTTTATC 960664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379325322049800