Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24]
4,040 sequences; 230,340,171 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq31 95.1 1e-14
>seq31
Length=1439309
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888
||||||||||| |||||||||||| |||| || ||||| || || | || || ||| |
Sbjct 961737 ATCATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCT 961678
Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948
|| | |||| | ||| |||| || ||| | |||||||| | || |||
Sbjct 961677 TCAGATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGAT 961618
Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008
|||||||| || || | ||| || |||||||| |||||| | || | |||||
Sbjct 961617 CAGCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTAT 961558
Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
| || |||||||| | || |||||||| || || || | || |||||
Sbjct 961557 AATATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGG 961508
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || ||||| ||||| | || || || || || ||| | || || ||| |
Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| |||| | |||||| | || ||| | |||||||| | || || ||
Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
||||||||||| | ||| || |||||||| |||||| | ||| | ||||| | |
Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| |||||||| | || ||||| ||||||| || | || |||||
Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGG 964094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418283403756800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |