Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq31 95.1 1e-14 >seq31 Length=1439309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 ||||||||||| |||||||||||| |||| || ||||| || || | || || ||| | Sbjct 961737 ATCATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCT 961678 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | |||| | ||| |||| || ||| | |||||||| | || ||| Sbjct 961677 TCAGATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGAT 961618 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 |||||||| || || | ||| || |||||||| |||||| | || | ||||| Sbjct 961617 CAGCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTAT 961558 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | || |||||||| | || |||||||| || || || | || ||||| Sbjct 961557 AATATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGG 961508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || || || || ||| | || || ||| | Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | |||||| | || ||| | |||||||| | || || || Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | ||| || |||||||| |||||| | ||| | ||||| | | Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || |||||||| | || ||||| ||||||| || | || ||||| Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGG 964094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418283403756800