Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq108 118 9e-22 seq50 116 3e-21 seq1683 104 2e-17 seq2544 98.7 9e-16 seq31 86.0 6e-12 >seq108 Length=811940 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || || ||||| || || | || |||||| | ||| Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| ||||| ||||| | || || || || Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| ||||| |||||||| | | | || | |||||||| Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGA-TGGACGTACACTTTCTGATTATAA 249047 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||||||||||||||||||||||| || |||||| | || | || ||| || Sbjct 249046 TATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCGA 248995 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || || ||||| || || | || |||||| | | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| || ||| | ||| ||||| ||||| | ||||| ||||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| |||||||||||||| | ||| | ||||||||| Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||||||||| || |||||||| || Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGT 249245 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| ||||| ||||| || || | || |||||| | ||| Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | ||| ||| || ||||| | || ||||| || Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 250617 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| |||||| ||||||| | || | |||||||| Sbjct 250616 CAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAAT 250557 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||||||||| || || ||| | ||| Sbjct 250556 ATTCAAAAAGAATCAACACTACATTTAGTA 250527 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || || || || || | || |||||| | ||| Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || ||||| ||||| | || || ||||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||| |||||||| ||| | |||||| || Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || || ||||| || || |||| | || |||| Sbjct 250784 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGGTA 250736 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| || || | || |||||| | || Sbjct 251192 ATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCA 251133 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||| || ||||| | || ||||| || Sbjct 251132 GATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCAA 251073 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||| |||||||| | || | |||||||| Sbjct 251072 CAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTATAAT 251013 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| || |||||||| || Sbjct 251012 ATTCAAAAAGAATCTACACTTCATCTTGT 250984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||| ||||| | ||||| ||||| ||| | || || || ||||| |||||||||||| Sbjct 249588 GACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTTGCTGGTAAACAGTTGGAA 249529 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || | ||| | |||||| || |||||||||||||| || |||||||| || Sbjct 249528 GATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCTACACTTCATCTTGT 249473 >seq50 Length=3512070 Score = 116 bits (128), Expect = 3e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||| | | ||||||| || || || || ||||| || || || ||||| || || || Sbjct 996631 TGAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCTTCTGATGGAATCGTCAA 996572 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 |||||| | || ||| ||||| |||||||| ||| | || ||||| | || || || Sbjct 996571 TGAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTCTA 996512 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||||| ||||| ||||| || ||||||||||||||||| | | || ||||| Sbjct 996511 TGGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATAC 996452 Query 57848 GTAC 57851 ||| Sbjct 996451 ATAC 996448 Score = 113 bits (124), Expect = 4e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||| | ||| |||| ||||| ||||||||||| | ||||| ||| ||| || || Sbjct 996861 GAACCATTATTGAAAGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAATGGCCTGAT 996802 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||| ||||| || |||||||| |||||||| || |||||||| || || Sbjct 996801 ATTTGGCAAATGTATAAAAAAGCTGAAGCATCTTTTTGGACAGTGGAAGAAGTGGATCTT 996742 Query 57630 TCTAA 57634 ||||| Sbjct 996741 TCTAA 996737 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 |||||||||||||||| ||| | | || || | || || ||||||||||| || |||| Sbjct 995690 AAAATCCGTTTGATTTCATGGAACATATTTCTTTAGAAGGTAAGACAAACTTCTTTGAAA 995631 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||||||| | ||||||||||||| || || ||| Sbjct 995630 AAAAAGTGGGAGAATATCAAAAATGGGGAGTAATG 995596 >seq1683 Length=220 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 |||||||||||| |||||||| ||||| ||||| || || | || |||||| | || || Sbjct 1 GCAAATTTTCGTCAAGACTCTTACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGA 60 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 | | | |||| || || | ||| ||||| ||||| | || || ||||| || Sbjct 61 TACTATTGAAAATGTTAAGGCTAAAATTCAAGACAAAGAAGGTATTCCCCCTGACCAACA 120 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374 | | || || ||||| |||||| ||||||| | ||| | |||||||| || Sbjct 121 AAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCTGATTATAATAT 180 Query 31375 TCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||||||| || |||||||| || Sbjct 181 CCAAAAAGAATCTACACTTCATCTTGT 207 >seq2544 Length=277 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| ||||| || || ||||| || || | || |||||| | || Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || || || || Sbjct 116 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAA 175 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || ||||||||||| ||| | |||||| || Sbjct 176 CAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 235 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||||||||| || |||||||| || Sbjct 236 ATTCAAAAAGAATCTACACTTCATCTTGT 264 >seq31 Length=1439309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||| | ||||| ||||| |||||| | || |||||| | Sbjct 964986 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGC 964927 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | || || | || || || || || | || || || Sbjct 964926 TTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGA 964867 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | || || ||||| ||||| | ||||| || || | ||||| Sbjct 964866 TCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATTA 964807 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCT 31398 ||| |||||||||||||| ||||||||||| Sbjct 964806 TAATATTCAAAAAGAATCTACTCTTCATCT 964777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||| || || || || || ||| | || |||||| | || Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || || || ||||| | || || || || Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || ||||| ||||| | ||||| | ||| | ||||||||| Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| |||||||| || ||||| || || | ||||| Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACT 964103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743888796800