Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 7e-15 seq50 86.0 1e-11 >seq4 Length=912327 Score = 96.9 bits (106), Expect = 7e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 |||||||||| || || ||||| ||||||||||| || ||| ||| |||||| | | Sbjct 866937 ATGATAGAAGAATTATAATGACAGCATGGAATCCAATCGATATTCCAAAAATGGCTTTAC 866996 Query 35589 CTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 |||| || || || |||||||||||| |||| |||||| || ||||| | | Sbjct 866997 CTCCTTGTCATTGTTTTGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTTT 867056 Query 35649 ATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCT 35704 |||| |||| | ||| | || | || || || || ||||||||||| || ||| Sbjct 867057 ATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCT 867112 >seq50 Length=3512070 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| ||||||||||| ||||| || |||||||||||| ||||| | ||||||||| Sbjct 996244 GTTGCTTTTGCTGCAGTAGAAGGTATTTTCTTTAGTGGTAGTTTCGCTGCTATTTTCTGG 996185 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| || |||| || || || | |||||| | |||||||| || Sbjct 996184 TTAAAAAAGAGAGGTCTTATGCCAGGACTTACATTTAGCAATGAACTTATTTCTAGAGAT 996125 Query 102038 GA 102039 || Sbjct 996124 GA 996123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989532776658200