Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq43 149 8e-31 seq50 147 3e-30 seq296 84.2 3e-11 >seq43 Length=2749190 Score = 149 bits (164), Expect = 8e-31 Identities = 226/314 (72%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || || ||||| | ||||||||| | ||| || |||| |||| ||||| | || | | Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT-TGG 1506634 Query 63513 CCT-CCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | || || || |||||| | || | | || || || || || || ||| | Sbjct 1506635 TGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAA 1506693 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTA 63629 | | ||| |||| |||||| |||||||| || ||||| || ||||| || ||| ||||| Sbjct 1506694 TGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTA 1506753 Query 63630 AGTAGAAAACAGCT 63643 | || ||||||||| Sbjct 1506754 A-TAAAAAACAGCT 1506766 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354 || || || ||| || | | ||||| ||| || || || |||||||| | | ||| Sbjct 1504428 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTT 1504487 Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414 || |||||| ||| | | ||| || || || ||||| || ||||| |||| ||||| Sbjct 1504488 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 1504547 Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474 | || || ||||| ||||| || ||||| | || ||||||||||| |||||||| ||| Sbjct 1504548 CTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCA 1504607 Query 62475 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 1504608 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 1504650 Score = 136 bits (150), Expect = 5e-27 Identities = 267/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||||||||| ||| || ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||| |||||||| | |||||| | | |||||| |||| || | | ||||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 1505193 Query 62905 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 62958 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 1505194 GAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 1505253 Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 1505254 TACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 1505313 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 || || ||||||| |||||| ||||| || ||||| ||| |||||||| | Sbjct 1505314 TTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCA 1505373 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 1505374 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 1505433 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTC 63169 ||| ||| ||||| |||||| ||| Sbjct 1505434 GAATTTGTCGTTTATATCT--TTTCTCATTC 1505462 Score = 104 bits (114), Expect = 3e-17 Identities = 182/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | ||||| || | ||||||||| ||||| ||||||||||| | ||| | |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 63882 TAAATAATAACCGAATTGAGCTTAT 63906 ||||| || | ||||| | ||||| Sbjct 1507070 TAAATTATTGCAGAATTTAACTTAT 1507094 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| |||| | ||||| |||| |||||| || ||||| ||| Sbjct 1504842 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCA 1504901 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||| | |||||||| || | |||| || | ||||||||| || |||||| Sbjct 1504902 CCATAATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 1504961 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 ||||| | | || ||| || || || | ||||||| |||||||| Sbjct 1504962 GGATAGCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || | |||||||||| |||| | |||| |||||| |||||||| || | Sbjct 1505724 TTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGGACACATTAAAGT 1505783 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| | | |||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 1505784 CCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 1505842 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||| | ||||| ||| || || ||||| Sbjct 1505843 ATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 >seq50 Length=3512070 Score = 147 bits (162), Expect = 3e-30 Identities = 159/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || |||||||| | ||||| || || || |||||| || ||||||||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 ||||| || ||||||||| ||||||||||| || || ||||| |||||||| |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 34032 TCGTCTGG-TGTTAGTTTATTCCAATCA 34058 || |||| |||| |||||||||||| Sbjct 996629 TC-ACTGGCAGTTAAATTATTCCAATCA 996655 Score = 113 bits (124), Expect = 6e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| || ||| | |||| || || |||| |||||||||| ||||||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 996844 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||| ||| | ||| || ||| || ||||| ||||| || || | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || || | |||||| || |||||| || ||||||||||||||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33780 ||| | | || | || || || ||||| |||||| ||| ||||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 | || ||| ||||| |||| |||| || || ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| |||||| ||||| ||||| |||||| || || || || || ||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || |||| ||||||||||||||||||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 Score = 82.4 bits (90), Expect = 1e-10 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||||| | || ||||| || ||||||||||| || ||||| |||||| ||| Sbjct 995796 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 995855 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | || ||| ||||| ||||| | || ||| || | || | || | ||||||||||||| Sbjct 995856 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGTTCA 995915 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566 || || |||| | ||||| || | || ||| | ||| |||| | Sbjct 995916 ATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTTTGTACAATG 995975 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 ||||| ||||| |||||||| ||||| || || | |||| Sbjct 995976 TGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 >seq296 Length=690042 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 31358 |||||| || ||||| ||| ||||||||| |||||| |||||| | | |||||||| Sbjct 408589 TCCTGTAGAACCAAATCCTCCATCTCCTCTGTCTGTATTATCTAAACTATTTACTTCTTG 408530 Query 31359 AAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTTAC 31418 |||||| ||||| ||| || | | |||| || ||||| | |||||| | || Sbjct 408529 AAGTTCAGGATATATTATTTTTTCACAAATTAATTGGGCTATACGATCTCCTGGTGAAAC 408470 Query 31419 ATTAAACG-TACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATA 31472 ||||| | | |||| | | ||||| || | ||||||| ||||||||||| Sbjct 408469 TTTAAAAGGTTCATTA-CTGTGATTAAACAGTACTACTCCTACATTTCCCCTATA 408416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629785794211200