Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq43 187 2e-42 seq50 158 1e-33 >seq43 Length=2749190 Score = 187 bits (206), Expect = 2e-42 Identities = 229/311 (74%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 ||| ||||| ||||||| | | |||| ||| || || || | |||||| | || ||| Sbjct 1504427 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCT 1504486 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 ||| |||| |||| || ||||||||||| ||||| ||||| || | ||||| Sbjct 1504487 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 1504546 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 ||||||||| |||||||| || |||||||| || || |||||||| | ||| ||||| | Sbjct 1504547 TCTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 1504606 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 || ||||| || ||||| ||||| |||| | |||||| | ||||||| || ||| Sbjct 1504607 AGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 1504666 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCA 37341 | | ||||| | | ||||||||||||||| ||||| | | || ||||||||| Sbjct 1504667 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAGCATT--CCACATATCG 1504724 Query 37342 TATTGTAGAAT 37352 ||||||| ||| Sbjct 1504725 TATTGTAAAAT 1504735 Score = 136 bits (150), Expect = 4e-27 Identities = 213/301 (71%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 38095 TTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| | || ||| || || ||||| || ||||||||||||| ||| || | | Sbjct 1506467 TTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATATATAGCAAA 1506526 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 |||||| |||||||||| ||||| |||| || ||||| | |||| ||||| |||| ||| Sbjct 1506527 TGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATACTCT 1506586 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| || | | |||||||||| || | |||| | ||| ||||| | || Sbjct 1506587 AATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTTGC 1506646 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATT 38332 ||| ||| | || | ||| || ||||| || || |||| | || | || ||| Sbjct 1506647 TCGAATACAATGTACATTAAGTCCAATACCACCAGC-TGATTTGCTAATGAGTGCACATC 1506705 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||| || ||| | || ||||| ||||| || || | |||| || || |||||| | Sbjct 1506706 TTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAATAAAAAACAGC 1506765 Query 38393 T 38393 | Sbjct 1506766 T 1506766 Score = 114 bits (126), Expect = 1e-20 Identities = 246/365 (67%), Gaps = 16/365 (4%) Strand=Plus/Plus Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 ||||||| ||||||||| | ||| || | | |||| | ||||||||||||| Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGTA----TTTTCGTAATTATTCTCAACTTG 37653 ||| || ||||| | ||||| || |||| |||| || | | ||| || || Sbjct 1505137 CATCGATAATTTTGTCGAGATT----ACAAGTAACAATTTTTGTTACT-TTCAGAAGTTT 1505191 Query 37654 TCGAACAT-AAATACGTTATTATTA------ACAAATTTACTCAACGAAATAGATCCTAG 37706 | ||| || |||| | |||| || ||||| || | | | ||| || ||| Sbjct 1505192 TTGAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAA 1505251 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 |||||| ||||||||||||||| | | | || | || |||||||| | |||||| Sbjct 1505252 ATTACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACT 1505311 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 | | |||||||| | ||| ||||| ||||| ||||||| ||||||||| || Sbjct 1505312 ACTTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAG 1505371 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGC 37886 ||||| || |||||| ||| | ||||| | ||||| | |||||||| ||| || Sbjct 1505372 CATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGC 1505431 Query 37887 TTTAA 37891 || || Sbjct 1505432 TTGAA 1505436 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | ||||||| ||||||||||| || |||||| | ||| || || | |||| Sbjct 1504153 CCATTTTCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATAT 1504212 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 | | | |||||| |||||||||||| ||||| | || |||||||||| ||||| Sbjct 1504213 GAACATTTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAA 1504272 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 | |||||| | ||| |||||||| |||||||| | ||||| || |||||||| Sbjct 1504273 TTATTTTTTGTGGTATTTCCCAAACTGTTTTATAAAGCATTTTTAAATCATCTGGTA 1504329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38424 AAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTAT 38483 ||| | ||| |||||||||||| | || | ||| || ||| ||||||| |||||||| Sbjct 1506862 AAAAAGTGTTGGAGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTAT 1506921 Query 38484 TACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | | | ||||| | || || ||| | | | || ||||||| |||||| ||||| Sbjct 1506922 AGCTTTGTTAATATCTTCACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGG 1506981 Query 38544 TCTTTCTATTATTTTATTAT-TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 |||||| | || ||| || | | ||||| || ||| | |||| | ||||| | | Sbjct 1506982 TCTTTCAACTACTTTTCCATGTATTTTTAA-TAAATAACTTCTTTCAAGCGTTTTGAAAC 1507040 Query 38603 CAAAATAACTATATGAATAATCTCTATCGTA 38633 |||||||| |||| | |||||||||| || Sbjct 1507041 CAAAATAATTATAACTAAAATCTCTATCATA 1507071 >seq50 Length=3512070 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 |||||||| ||||| ||| ||||||||||||||||| ||||||||| || | |||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| |||||||||| ||||| || | ||||| ||| | | |||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 ||||| || || |||||| || |||||||||||||| | ||| |||||| | |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 12080 TCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 || |||||| |||| ||||||| || ||| Sbjct 996629 TCACTGGCAGTTAAATTATTCCAATCAAATACATC 996663 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| ||||||||| ||| | |||||||||||| || ||||| ||||| ||| || Sbjct 995793 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 995852 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||| ||||| ||||| | || || || | ||| |||||||||| || | | Sbjct 995853 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 995912 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || || || ||||| | || || || || | ||| ||||||| |||| Sbjct 995913 TCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTTTGTACA 995972 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||| ||||||||||| ||||||||||||||||| || Sbjct 995973 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 996013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468501139497600