Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq50 161 1e-34 seq43 159 5e-34 >seq50 Length=3512070 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 ||||||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || |||||||| | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 36607 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 36608 TCGTTTGGTGTTAGTTTATTCCAATCA 36634 || | | |||| |||||||||||| Sbjct 996629 TCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 120 bits (132), Expect = 4e-22 Identities = 105/128 (82%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 ||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT-TTGCAAGG 36760 ||| || ||| | ||||||| ||||||| |||||||||| | |||||| || ||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAA-T 996853 Query 36761 ATTGGTTC 36768 | |||||| Sbjct 996854 AATGGTTC 996861 Score = 100 bits (110), Expect = 4e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 35954 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 36013 ||| ||| |||||| | || ||||| || ||||||||||| |||||||| |||||| Sbjct 995787 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 995846 Query 36014 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 36073 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 995847 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 995906 Query 36074 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGG--TG 36131 ||||||||||| ||| || || | ||||| ||| | ||| ||| | || | Sbjct 995907 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTT 995966 Query 36132 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 |||||| ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 995967 TGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||| ||| | ||| ||| ||| || ||||| ||||| || || | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || || | || || ||| ||||||||| ||||||||||| ||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 ||| | | || | || ||||| ||||| |||||| ||| ||||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 | || ||| ||||| |||| | || ||||| ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| |||||| |||||| ||||| ||||| |||||| || || || || |||||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 ||| || |||| |||||||||||| || ||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 >seq43 Length=2749190 Score = 159 bits (176), Expect = 5e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147 || || || ||| || ||| ||||| ||| || || || |||||||| | | ||| Sbjct 1504428 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTT 1504487 Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 1504488 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 1504547 Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267 | || || ||||| ||||| || ||||| | ||| ||||||||||| |||||||| ||| Sbjct 1504548 CTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCA 1504607 Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 1504608 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 1504650 Score = 143 bits (158), Expect = 4e-29 Identities = 225/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || || ||||| ||||||||||| | || | | |||||| |||||| ||||| || Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1506633 Query 66306 --CTTCCACTTGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 66362 | || ||||| |||||| | || | | || || || || || || ||| Sbjct 1506634 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 1506692 Query 66363 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 66421 || | ||| |||| |||||| || ||||| || || || |||||||| || ||| |||| Sbjct 1506693 ATGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 1506752 Query 66422 AAGTAGAAAACAGCT 66436 || || ||||||||| Sbjct 1506753 AA-TAAAAAACAGCT 1506766 Score = 141 bits (156), Expect = 1e-28 Identities = 268/391 (69%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| |||||||||||||| ||| || ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 ||| |||||||| | |||||| | | |||||| |||| || | | ||||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 1505193 Query 65698 GAAAATCAAATCGCTCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 65751 ||||||||||| | || | |||||||||| || | |||| || || | || Sbjct 1505194 GAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 1505253 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 1505254 TACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 1505313 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 || || ||||||| |||||| ||||| || ||||| ||| |||||||| | Sbjct 1505314 TTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCA 1505373 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 1505374 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 1505433 Query 65932 TTATTATAGATTTGTATCTCTTTTCTCTTTC 65962 || | | | ||| ||||||||| ||| Sbjct 1505434 GAAT--TTGTCGTTTATATCTTTTCTCATTC 1505462 Score = 105 bits (116), Expect = 9e-18 Identities = 125/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 ||||||| | ||| || || | |||||||||| |||| |||||| |||||| | Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 | ||||| ||| ||||| ||||| | ||||| ||| || || ||||| Sbjct 1505831 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 96.9 bits (106), Expect = 5e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 66675 TAAATAAT 66682 ||||| || Sbjct 1507070 TAAATTAT 1507077 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| |||| || || |||| |||| | ||||| ||||||||||| || ||||| ||| Sbjct 1504842 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCA 1504901 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 || ||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 1504902 CCATAATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 1504961 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 ||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 1504962 GGATAGCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658139562273600