Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq108 129 6e-25 seq31 118 1e-21 seq2544 105 7e-18 seq1683 82.4 8e-11 >seq108 Length=811940 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||||| ||||| || | || |||||||||||||| |||||||| Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| || |||||||||||| |||||| | ||||||||| || || Sbjct 251254 AATGTACGTCCA-TCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 251312 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||| | ||||| | ||| | || || | || ||| | Sbjct 251313 AATTCCTTCCTTGTC-TTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTA 251371 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || || || ||||| ||||| || || || ||||| Sbjct 251372 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 251420 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||||| ||||| || | || || ||||||||||| |||||||| Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| ||||||||||||||| | |||| | || ||||||||||| Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| || ||| | | ||| | || |||| | || || Sbjct 250630 ATACCTTCTTTATC-CTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAAC 250688 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | || || ||||| ||||||||| Sbjct 250689 TTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCATA 250737 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||||| || || ||||||||||| |||||||| Sbjct 248999 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAA 249058 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | ||||| |||||| |||||| | || ||||| ||||| Sbjct 249059 AGTGTACGTCCA-TCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGG 249117 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||||| ||||| | ||| | |||||||| | || | Sbjct 249118 AATACCTTCTTTGTC-TTGAATTTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAA 249176 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| || | || || || || | || || || || ||||||||| Sbjct 249177 CTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCATA 249226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | |||| ||||| |||||||| || ||||||||| | || | Sbjct 249239 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGTACGACCA 249298 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||||||||||| ||||||| | || || || || || || ||||||||| Sbjct 249299 TCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTG 249358 Query 139670 TCGGTGATTTTTTGTTTT 139687 || ||| |||||| ||| Sbjct 249359 TC-TTGAATTTTTGCTTT 249375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | |||| ||||| ||||||||||| || |||||| | || | Sbjct 249467 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 249526 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||||||||||| ||||||| | || || || || || || ||||||||| Sbjct 249527 TCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTG 249586 Query 139670 TCGGTGATTTTTTGTTTT 139687 || ||| |||||| ||| Sbjct 249587 TC-TTGAATTTTTGCTTT 249603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | |||| ||||| ||||||||||| |||||||| | ||| | Sbjct 250978 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTACGACCA 251037 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| |||||| | |||| | || ||||||||||| || |||||||| Sbjct 251038 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 251097 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | |||| | | ||| | || || | | || || || | || | Sbjct 251098 TC-CTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAAT 251156 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | ||||| || || |||||||| Sbjct 251157 AGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCAT 251192 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||||||||| || |||||| | || | ||||| | ||||| ||| Sbjct 250768 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCA 250827 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | || || || ||||| || ||||||||||| ||| | || | ||| Sbjct 250828 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTC-TTGAATCTTGGCTTT 250886 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | || |||| | || || |||| || | ||||| || || | || Sbjct 250887 TACATTTTCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGT 250946 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| ||||||||| Sbjct 250947 TTTGACGAAAATTTGCATA 250965 >seq31 Length=1439309 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| |||| ||||| ||||| ||||| |||||||||||||| Sbjct 964094 CCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAA 964153 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || |||||||||||| |||| | |||||| ||||| ||||| Sbjct 964154 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 964213 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | |||| | | || | |||||| | | || || Sbjct 964214 ATTCCTTCTTTATC-TTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAAC 964272 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||| || || | ||||| || || ||||||||| || Sbjct 964273 TTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGCATACCT 964324 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| || ||||| | ||||| |||||||| || || ||||| Sbjct 960531 CCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAG 960590 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || ||||| |||||| | |||| ||||||||||| ||||| Sbjct 960591 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 960650 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||||| | || | ||| || | | || || Sbjct 960651 ATTCCTTCTTTATC-TTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAAC 960709 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | ||||| || || |||||||| Sbjct 960710 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| || || |||| ||||| ||||| ||||| |||||||| Sbjct 961280 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961339 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || |||||||||||| | |||| |||||| || || || || Sbjct 961340 AGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 961399 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | |||| | || | || || | | || || Sbjct 961400 ATTCCTTCTTTGTC-TTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAAC 961458 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | ||||| || || |||||||| Sbjct 961459 GTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 961506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| || || |||| ||||| ||||| ||||| |||||||| Sbjct 961508 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961567 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || ||||| |||||| |||||| ||||||||||| ||||| Sbjct 961568 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 961627 Query 139658 ATGCCTTCTTTGTC 139671 || |||||||| || Sbjct 961628 ATTCCTTCTTTATC 961641 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | ||||| || ||||| || |||||||| | || || || Sbjct 964336 CAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTTCTTCCATC 964395 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| ||||||||||||||| | |||| |||||| || || || || || ||||||||||| Sbjct 964396 TTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGAATTCCTTCTTTGTC 964455 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| ||||||||||| |||||||| | ||| || ||||| || ||| Sbjct 964780 TGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGT 964839 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | |||| |||||| ||||| || || || || ||||| || ||| | || Sbjct 964840 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATC-TTGAATCTT 964898 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | |||| | || | |||||| | | || || || | ||| | || || || || Sbjct 964899 AGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGT 964958 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || || || || || || ||||| Sbjct 964959 TAAAGTCTTAACAAAGATCTGCAT 964982 >seq2544 Length=277 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | |||| ||||| ||||||||||| || |||||| | || | Sbjct 270 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCA 211 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||| ||||||||| ||||||| | || ||||| ||||| || ||||| || Sbjct 210 TCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTA 151 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| |||||| | | ||| | ||| || | | || || || | || | Sbjct 150 TCT-TGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAAT 92 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || || | |||||||| |||||||||||| Sbjct 91 TGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCATA 55 >seq1683 Length=220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | |||| ||||| |||||||| || |||||||| | || | Sbjct 213 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGTACGACCA 154 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||||||||||||| | |||| | ||| || || || || || ||||||||| Sbjct 153 TCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCTTCTTTG 94 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||| | | ||| | || || | | || || |||| || | Sbjct 93 TC-TTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAGAGTAAT 35 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 || || || || | || || ||||| |||||| Sbjct 34 AGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496038948768000