Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq43 185 1e-41 seq50 158 2e-33 >seq43 Length=2749190 Score = 185 bits (204), Expect = 1e-41 Identities = 228/310 (74%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 || || || ||| || ||| ||||| ||| || || || |||||||| | | ||| Sbjct 1504428 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTT 1504487 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 1504488 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 1504547 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 | || || ||||| ||||| |||||||| | |||||||||||||| |||||||| ||| Sbjct 1504548 CTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCA 1504607 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--A 79204 |||||||| |||||||||||||| | || ||| |||||||| || ||| | | | Sbjct 1504608 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC--ATGTTTAGCAA 1504665 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 |||| | ||| | | ||||||||| | || || || | | ||||||| | ||| | Sbjct 1504666 TTTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAGCATTCCACATATCGT 1504725 Query 79265 ATTGTAGAAT 79274 |||||| ||| Sbjct 1504726 ATTGTAAAAT 1504735 Score = 143 bits (158), Expect = 4e-29 Identities = 225/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 ||||| || | |||| |||| ||| |||||||| ||||| | |||| ||| || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1506633 Query 80185 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | || || || |||||| | || | | || || || || || || ||| Sbjct 1506634 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 1506692 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTT 80300 || | ||| |||| |||||| || ||||| || || || || ||||| ||| ||| |||| Sbjct 1506693 ATGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 1506752 Query 80301 AAGTAGAAAACAGCT 80315 || || ||||||||| Sbjct 1506753 AA-TAAAAAACAGCT 1506766 Score = 132 bits (146), Expect = 7e-26 Identities = 266/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||||| ||| || ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 ||| |||||||| | |||||| | | || ||| |||| || | | ||||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 1505193 Query 79577 GAAAATCAAATCGTCCATCTA------TTACAAACATGTTCAACGCGACAGATGCCAGAT 79630 ||||||||||| | || | |||||||||| || | || | || || | || Sbjct 1505194 GAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 1505253 Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTAC 79690 |||| || || || |||| | | | ||| || | | ||| || || | ||||||| Sbjct 1505254 TACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 1505313 Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 79750 || || ||||||| |||||| ||||| || ||||| ||| |||||||| | Sbjct 1505314 TTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCA 1505373 Query 79751 TGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 79810 | | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 1505374 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 1505433 Query 79811 TTATTATAGACTTGTATCTCTTTTCTCTTTC 79841 || | | | | ||| ||||||||| ||| Sbjct 1505434 GAAT--TTGTCGTTTATATCTTTTCTCATTC 1505462 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 80680 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 ||||| |||| ||||||| || || ||||| || | || |||| || ||||| || Sbjct 1507281 CTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATATT 1507340 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || ||| Sbjct 1507341 GCATAATCTGGATGTTTAGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCTAAT 1507400 Query 80800 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 || || || ||||| || ||||| || |||||| Sbjct 1507401 TCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 1507438 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 79847 GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAG 79906 ||||||| | ||| || || | ||||||||||| | || |||||| |||| | | Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 79907 GACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCC 79966 ||||||| || | ||| ||| |||| |||||||||||||| |||||||| |||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 79967 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | ||||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 1505831 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 96.9 bits (106), Expect = 5e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | | ||| || || || |||||| | ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | ||||||||| ||||| ||||||||||| | || || |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||| | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 80554 TAAATAAT 80561 ||||| || Sbjct 1507070 TAAATTAT 1507077 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| | |||| | ||| || | ||||||||| || ||||| || || ||| Sbjct 1504848 TAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCACCATAA 1504907 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || | ||||| || || | |||| || | |||||||||| || ||||||||||| Sbjct 1504908 TACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATAG 1504967 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | || ||| || ||||| | ||||||| |||||||| Sbjct 1504968 CGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 >seq50 Length=3512070 Score = 158 bits (174), Expect = 2e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || |||||||| | ||||| || || || |||||| || |||||||||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| || ||||| ||| ||||||||||| || || ||||| ||||||||||||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCA 50436 || ||| |||| |||||||||||| Sbjct 996629 TCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 109 bits (120), Expect = 8e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | ||| |||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| || ||| | |||| || || |||| |||||||||| ||||||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 996844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| ||||| ||| ||| || ||||| ||||| || || | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | || || ||| |||||| || ||||||||||| ||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 |||| | | || | || | || || ||||| |||||| ||| ||||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 | || ||| ||||| |||| |||| || || ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||||| | || ||||| || |||||||| || |||||||| |||||| Sbjct 995787 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 995846 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 995847 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 995906 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 ||||||||||| || ||||| | ||||| ||| | || ||| | ||| Sbjct 995907 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTT 995966 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 995967 TGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 87.8 bits (96), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| |||||| |||||| ||||| ||||| |||||| || || || || || ||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 || || |||| ||||||||||||||||||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718232527425600