Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq50 123 2e-23 >seq50 Length=3512070 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || | |||||||| ||||| ||||||||||| |||| ||| || ||||||||| || Sbjct 995793 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 995852 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | ||| ||||| ||||| | || ||||| | | || || |||||||||| | Sbjct 995853 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 995912 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT-AGAAGGAGGATATTT 13852 || || ||||| || || ||||| ||| | ||| || ||||| || | || Sbjct 995913 TCAATTTTGACAGCATCCTTAATAATTGATGTGA----CTCGTTCAGAAGATGGTTTTTG 995968 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 995969 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| ||||||||| || |||||| | ||||||||| | |||| |||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || ||||| || || |||||| || || || ||||||||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 ||||||| || | | || |||||||||| |||||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAATAA 996343 Score = 102 bits (112), Expect = 8e-17 Identities = 134/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||| | | || ||||||||||||||| | || ||||||||| || || | Sbjct 996427 CCTT-TCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAA 996485 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-C 14240 |||||||| || | ||||||||||| || || | || || | ||||||||| Sbjct 996486 CATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTT 996545 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC 14300 || | ||||| ||| | | ||| ||||| || || |||||| ||||||||||||||| Sbjct 996546 GACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCT 996604 Query 14301 AA 14302 || Sbjct 996605 AA 996606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || ||| |||||||||||| | ||| |||||||||||||||| || |||||||| Sbjct 995597 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCT 995656 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATA 13670 | || |||| |||||| |||||||| |||||| |||||| Sbjct 995657 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 995698 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14420 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 996737 TTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 996796 Query 14421 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTTAAGAAT 14479 || || || || ||||||||||| |||||||| || ||| ||||||| | | Sbjct 996797 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTTCAATAA 996855 Query 14480 TGGTTC 14485 |||||| Sbjct 996856 TGGTTC 996861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479703773736000