Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq50 111 2e-19 >seq50 Length=3512070 Score = 111 bits (122), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || | |||||||| ||||| | ||||||||| |||| ||| || ||||||||| || Sbjct 995793 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 995852 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | | ||| ||||| ||||| | || ||||| | | || || |||||||||| | Sbjct 995853 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAATTCTTGT 995912 Query 13582 TCTATAGACACAGCCTCGTTTATAATA-ATCTTAATAATGTCATTAGAAGGAGGATATTT 13640 || || ||||| || || ||||| || | | | | | ||||| || | || Sbjct 995913 TCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGT----TCAGAAGATGGTTTTTG 995968 Query 13641 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 995969 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| ||||||||| || |||||| | ||||||||| | |||| |||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || |||||||| || |||||| || || || ||||||||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 13802 CTATTAGTCGTTCTCCAAACGATG--CTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 | | | ||||| ||| | | |||| || || |||||| ||| ||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTT--TATCCAATTTAACGCCCAATG 996298 Query 13860 AGAttttttt 13869 || ||||||| Sbjct 996299 AGCTTTTTTT 996308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| ||||| | | || ||||||||||||||| | || ||||||||| || || | Sbjct 996427 CCTT-TCTTTTGCATCTGCAATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAA 996485 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-C 14028 ||||| || || | ||||||||||| ||||| | || |||| |||||| || Sbjct 996486 CATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTT 996545 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 || | ||||| ||| | | || ||||| || || |||||| ||||||||||||||| Sbjct 996546 GACT-AAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCT 996604 Query 14089 AA 14090 || Sbjct 996605 AA 996606 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 || || ||| |||||||||||| | ||| |||||||||| ||||| || |||||||| Sbjct 995597 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCT 995656 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATA 13458 | || |||| |||||| ||||| || |||||| |||||| Sbjct 995657 AAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 995698 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 14149 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14208 ||||||||||| ||||| || |||||||||||| || ||||||||||||||||| | Sbjct 996737 TTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTTGC 996796 Query 14209 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 || || || || ||||||||||| |||||||| Sbjct 996797 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCT 996834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478564631265600