Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq108 131 1e-25 seq31 105 5e-18 seq2544 100 2e-16 >seq108 Length=811940 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || || ||||| | ||| ||||| || Sbjct 250966 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAA 251025 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || ||||||||||| || ||||||||||||| ||||||||||| || Sbjct 251026 AGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 251085 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| || |||| || | ||| || || ||| || || Sbjct 251086 ATACCTTCTTTATC-CTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAAC 251144 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || || ||||| ||||||||||||||| Sbjct 251145 TTCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCATT 251193 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| ||||| || | ||||||| | || ||||||||||| || ||||| Sbjct 249035 TCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAG 249094 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||||||||| | || | ||||||||| || || |||| || | Sbjct 249095 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 249154 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||||| ||| || || || | || |||||||| || || ||||| || ||| Sbjct 249155 TCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACA 249214 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 249215 AAAATTTGCAT 249225 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||||| || || ||||| | |||||||||||| Sbjct 250738 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 250797 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||||||||| || ||||| ||||||| |||||| || | || Sbjct 250798 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 250857 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | ||| || ||| ||| || || Sbjct 250858 ATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 250917 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || |||||||| || ||||||||||| Sbjct 250918 TCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964 Score = 113 bits (124), Expect = 3e-20 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| ||||| || | |||||| | || |||| ||||| || |||||| Sbjct 250546 TCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAA 250605 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 ||||||| ||||||||||| || | ||||||||| || |||| | | || || || Sbjct 250606 ATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATC-CTGAATTTTAGTC-TTAACAT 250663 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| || ||| || || || |||| || ||||||||||| || ||||| || | Sbjct 250664 TTTCAATAGTATCGGATGCTTCAACTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAA 250723 Query 43097 CAAAAATTTGCAT 43109 | ||||||||||| Sbjct 250724 CGAAAATTTGCAT 250736 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || || ||||| | ||| |||||||| Sbjct 249227 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAA 249286 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| ||||| || ||||| |||| || |||||| || | ||| Sbjct 249287 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249346 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || |||| || | ||| | || ||| || || Sbjct 249347 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACT 249406 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || ||||| || |||||||||||||| Sbjct 249407 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453 >seq31 Length=1439309 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || ||||| || ||||| || ||||| || | || || ||||| | ||||||||| Sbjct 960528 TCTCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCT 960587 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 | | ||| | | | || || | |||||| || |||||||||||||| || ||||| | Sbjct 960588 AAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGA 960647 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | |||||||| || ||| |||| || | | | ||| || ||| || Sbjct 960648 GGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCA 960707 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 960708 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 960758 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || ||||| || |||||||| | ||| || || || | ||| ||||| || Sbjct 961280 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961339 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | |||||| || ||||||||||| || ||||| || | || Sbjct 961340 AGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 961399 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | || || ||| || ||| Sbjct 961400 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACG 961459 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 961460 TCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 961507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| || |||| ||| | ||| || || || | ||| ||||| || Sbjct 960759 CCTCCGCGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAGAG 960818 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | |||||||| ||||||||||| || |||||||| | || Sbjct 960819 AGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAGGA 960878 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | || || ||| || || Sbjct 960879 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACT 960938 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 960939 TCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 960986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| ||||| || | ||| | | || || | |||||| || |||||| Sbjct 964792 TCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAA 964851 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| || |||||||| | || | || ||||| || ||| | || || | Sbjct 964852 ATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGCCTTTACATTC 964911 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| ||| || || |||| || ||||||||||| |||| ||| || ||| Sbjct 964912 TCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTTAAAGTCTTAACA 964971 Query 43099 AAAATTTGCATTTT 43112 || || |||||||| Sbjct 964972 AAGATCTGCATTTT 964985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || ||||| || |||||||| | ||| || || || | ||| ||||| || Sbjct 960987 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961046 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || | |||||| || ||||||||||||||||| ||||| | || Sbjct 961047 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 961106 Query 43003 ACACCTTCTTTTTC 43016 | |||||||| || Sbjct 961107 ATTCCTTCTTTATC 961120 >seq2544 Length=277 Score = 100 bits (110), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | ||||| | || ||||| || || || ||||| Sbjct 246 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTACCAGCAAAG 187 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 |||| || ||||||||| | || | |||||| || || ||| | | | ||| || Sbjct 186 ATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTATC-TTGAATTTTAGT-TTTAACAT 129 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| ||| || ||| || || |||| || || |||||||| || |||||||| | Sbjct 128 TTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTA 69 Query 43097 CAAAAATTTGCAT 43109 |||| |||||||| Sbjct 68 CAAATATTTGCAT 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381350822314320