Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq43 165 1e-35 seq50 152 7e-32 >seq43 Length=2749190 Score = 165 bits (182), Expect = 1e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 || || || ||| || ||| ||||| |||||| || || |||||||| | | ||| Sbjct 1504428 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTT 1504487 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169 || |||||| ||| | | ||||||||| || |||||||| ||||| |||| ||||| Sbjct 1504488 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 1504547 Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229 | || || ||||| ||||| || ||||| | || ||||||||||| |||||||| ||| Sbjct 1504548 CTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCA 1504607 Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGT 71280 |||||||| || ||||||||||| | || | | |||||||| |||||| Sbjct 1504608 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGT 1504658 Score = 145 bits (160), Expect = 1e-29 Identities = 269/391 (69%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||| ||||| ||| || ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 ||| |||||||| | |||||| | | || ||| |||| || | | ||||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 1505193 Query 71660 GAAAATCAAATCTCCCATCTA------TTACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||||||||| | || | ||||||||| || | |||| || || | || Sbjct 1505194 GAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 1505253 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 |||| || || || |||| | | || ||| || | || ||| || || | |||||||| Sbjct 1505254 TACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 1505313 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 || || ||||||| |||||| ||||| || ||||| ||| |||||||| | Sbjct 1505314 TTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCA 1505373 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 1505374 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 1505433 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTC 71924 || | || | ||| ||||||||| ||| Sbjct 1505434 GAAT--TTGTCGTTTATATCTTTTCTCATTC 1505462 Score = 141 bits (156), Expect = 1e-28 Identities = 225/316 (71%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 ||||| || | |||| || | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 || || ||||| | ||||||||| | |||||| ||| ||||| || || || ||| | Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1506633 Query 72268 --CTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | || || || ||||| | || ||| || || || || || || ||| Sbjct 1506634 GTGTACCTCTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCTGATTTGCT 1506691 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 72382 || | ||| |||| |||||| || ||||| || || || |||||||| || ||| ||| Sbjct 1506692 AATGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGT 1506751 Query 72383 TAAGTAGAAAACAGCT 72398 ||| || ||||||||| Sbjct 1506752 TAA-TAAAAAACAGCT 1506766 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||| || || |||| |||| || ||| || ||||||||||| || ||||| || Sbjct 1504842 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCA 1504901 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||| | ||||| || || | |||| || | ||||||||| || |||||| Sbjct 1504902 CCATAATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 1504961 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 ||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 1504962 GGATAGCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Score = 100 bits (110), Expect = 4e-16 Identities = 181/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | ||| || | | ||| || || || |||||| | ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | ||||||||||||||| ||||||||||| | || || |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 72637 TAAATAATAACCGAATTGAGTTTAT 72661 ||||| || | ||||| | |||| Sbjct 1507070 TAAATTATTGCAGAATTTAACTTAT 1507094 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 ||||| |||| ||||||| || || ||||| || | || |||| || |||| || Sbjct 1507281 CTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATATT 1507340 Query 72823 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || ||| Sbjct 1507341 GCATAATCTGGATGTTTAGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCTAAT 1507400 Query 72883 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 || || || ||||| || ||||| || |||||| Sbjct 1507401 TCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 1507438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 ||||||| | ||| || || | |||||| ||| | || |||||| |||||| | Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 ||||||| || | ||| ||| ||| |||||||||||||| |||||||| |||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 | ||||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 1505831 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 >seq50 Length=3512070 Score = 152 bits (168), Expect = 7e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 |||||||| || || | | ||||||||||||||||| ||||| ||||| | ||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || |||||||| | ||||| || | ||||||||| || |||||||||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 42515 TCGTCCGGTGTTAATTTATTCCAATCA 42541 || | ||||| |||||||||||| Sbjct 996629 TCACTGGCAGTTAAATTATTCCAATCA 996655 Score = 113 bits (124), Expect = 6e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 ||||||| | ||| |||||||| || |||||||| |||||||| || ||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| |||||| | ||||||| || |||| |||||||||| ||||||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 996844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | ||| ||| ||| || ||||| ||||| || || | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || |||| || || ||| |||||| || ||||||||||| ||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 ||| | | || | || ||||| ||||| |||||| ||| ||||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 | || ||| ||||| |||| |||| || || ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| |||||| |||||| ||||| ||||| |||||| || || || ||||| ||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 || || |||| ||||||||||||||||||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920 ||| ||| |||||| | || ||||| || ||||||||||| | ||||| |||||| Sbjct 995787 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 995846 Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 995847 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 995906 Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TG 42038 ||||||||||| ||| || || | ||||| ||| | ||| ||| | || | Sbjct 995907 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTT 995966 Query 42039 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 |||||| ||||| ||||| |||||||| ||||| || || | |||| Sbjct 995967 TGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671105307470400