Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq108 116 2e-21 seq1683 98.7 6e-16 seq31 93.3 3e-14 seq2544 91.5 9e-14 seq87 82.4 5e-11 >seq108 Length=811940 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| ||||||||||| || | | | | || |||||||| |||||| Sbjct 250768 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCA 250827 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || || | || ||||| | || || |||||||| || |||| |||| Sbjct 250828 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTT 250887 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| || ||| | || ||| || ||||| || || ||||||||||||||| Sbjct 250888 ACATTTTCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTT 250947 Query 33353 TTTACGAAAATTTGCAT 33369 || |||||||||||||| Sbjct 250948 TTGACGAAAATTTGCAT 250964 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || ||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || || || | ||| || ||| ||| || || | |||||| || | || Sbjct 251254 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 251313 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| | |||||| ||| ||| || || || | || Sbjct 251314 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACC 251373 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||||||||| ||||| || || | ||||| || || || |||||| |||| Sbjct 251374 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGATTAT 251426 Score = 104 bits (114), Expect = 1e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| ||||| |||||||| | | || || |||||||| |||||| Sbjct 249029 GTCGATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCA 249088 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || || | || || || | || || |||||||| || ||| |||| Sbjct 249089 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 249148 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| |||||| | || ||| || ||||| || ||||| ||||| ||||| Sbjct 249149 ACATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTC 249208 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||||||||| Sbjct 249209 TTGACAAAAATTTGCAT 249225 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| | ||| || |||||||| ||||| |||||||| | | | Sbjct 250978 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTACGACCA 251037 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| |||||| ||| || || | || || || | || || |||||||| Sbjct 251038 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 251097 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || | || ||| || | ||| || Sbjct 251098 TCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATA 251157 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| ||||| ||||| || ||||||||||| Sbjct 251158 GTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCAT 251192 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || ||||| || ||||| | ||| || |||||||| ||||| ||||| || Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || |||| || || ||| ||| || || | || || || | || Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| || || ||| ||| || ||| | || ||| Sbjct 250630 ATACCTTCTTTATCCTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAACT 250689 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || |||||||| |||||||| || |||||||||||||| Sbjct 250690 TCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| | ||| || |||||||| ||||| ||||| || | | | | Sbjct 249239 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGTACGACCA 249298 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || || ||| ||| || | | || ||||| | || || |||||||| Sbjct 249299 TCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTG 249358 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| | || | | || ||| || ||||| || Sbjct 249359 TCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACTTCAAGAGTAATA 249418 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| ||||| || || ||||||||||| Sbjct 249419 GTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453 >seq1683 Length=220 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| | ||| || |||||||| ||||| |||||||| | | | | Sbjct 213 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGTACGACCA 154 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || ||| ||| || || | ||| ||||| | ||| || |||||||| Sbjct 153 TCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCTTCTTTG 94 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || ||| ||| || || | || ||| || ||||| Sbjct 93 TCTTGAATTTTAGCCT---TAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAGAGTA 37 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGC 33367 || |||||||| |||||||| || |||||||||||| Sbjct 36 ATAGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGC 1 >seq31 Length=1439309 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| ||||| |||| ||| || |||||||| ||||||||||| | | | ||| || Sbjct 960545 CAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAGA----GTGTTCTTC 960600 Query 33217 -ATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 ||| ||| ||| |||||| ||| || || |||||||| || | || || ||||||| Sbjct 960601 CATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTT 960660 Query 33273 TTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | || |||| |||||| | | || || || | || ||| || || || | Sbjct 960661 TATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAA 960720 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || ||||| ||||||||||| || || |||||||| Sbjct 960721 TAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 >seq2544 Length=277 Score = 91.5 bits (100), Expect = 9e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | ||| | ||| || |||||||| ||||||||||| || | | | | Sbjct 270 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCA 211 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| ||||| ||| ||| || | | || || |||| || || ||||| || Sbjct 210 TCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTA 151 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || ||| ||| || || | || ||| || | ||| || Sbjct 150 TCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATT 91 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| |||||||||||||| || |||||||| Sbjct 90 GTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 >seq87 Length=1479609 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 ||||||| ||||| || || || ||| | || || || |||||||||||| ||| | Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | | ||||||||| || | ||||| |||||||| || ||| ||| || ||| Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 || || || | || || || ||||| || ||||| ||||| | |||||| || | Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279 Query 33360 AAATTTGCAT 33369 | || ||||| Sbjct 253280 ATATCTGCAT 253289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318761904187920