Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq108 132 3e-26 seq87 113 3e-20 seq2544 102 6e-17 seq31 100 2e-16 seq1683 89.7 4e-13 seq65 84.2 2e-11 >seq108 Length=811940 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | || || |||||||| || ||||||||||||||||||||| | Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||| || | |||||| || ||||| ||||| | |||||| || | || Sbjct 251254 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 251313 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| |||||| ||| || | ||| ||||||| | ||| || Sbjct 251314 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACC 251373 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || ||||||||||| || || || || ||||| || |||||| Sbjct 251374 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 251421 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| | | ||| |||| |||||||||||||| ||||| Sbjct 249035 TCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAG 249094 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | || || || |||| | ||||||||| ||| ||||||| ||| || | Sbjct 249095 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 249154 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | | || || || | ||||| |||||||| || | |||||| ||| Sbjct 249155 TCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACA 249214 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 249215 AAAATTTGCAT 249225 Score = 114 bits (126), Expect = 9e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | || || |||||||| || |||||||||||||||||||| Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| |||| ||||| || ||||| ||||| | || || || |||| Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 44015 ACACCTTCTTTAT-CTGAAATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | ||||||||||| ||||| |||| || || || | ||| |||||| | | || | Sbjct 250630 ATACCTTCTTTATCCTGAA--TTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAA 250687 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| ||||| || || | |||||| || || |||||||| Sbjct 250688 CTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| | | ||| |||| |||||||||||||| ||||| Sbjct 251002 TCTTTTTGAATATTATAATCAGAAAGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAA 251061 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | || || || |||| | |||||||||||| |||||| ||| || | Sbjct 251062 ATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTAACATTT 251121 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||||| | || || || | ||||| ||||| || || | || || ||| Sbjct 251122 TCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGACA 251181 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 251182 AAAATTTGCAT 251192 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| |||||||||||| | ||| |||| ||||| ||||| || ||||| Sbjct 249263 TCTTTTTGGATATTATAATCGGAAAGAGTACGACCATCTTCCAACTGTTTACCAGCAAAG 249322 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| | || ||||| | || | ||||||||| ||| ||||||| ||| || | Sbjct 249323 ATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 249382 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| | ||| | || || || | ||||| |||||||| || | |||||| ||| Sbjct 249383 TCAATGGCATCATAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACA 249442 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 249443 AAAATTTGCAT 249453 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| | ||| |||| |||||||||||||| ||||| Sbjct 250774 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAG 250833 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | || ||||| |||| | ||||||||| ||| ||| || ||| || | Sbjct 250834 ATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTT 250893 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | | || || || | ||||| || || || || | ||| || || Sbjct 250894 TCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACG 250953 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 250954 AAAATTTGCAT 250964 >seq87 Length=1479609 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||||||||| || ||| ||| |||| || ||||| ||||| ||||| | Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | | |||||||| || | |||| ||||||||||| |||||| ||| || | Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 | | |||||||| | || || || | || || |||||||| || ||||| ||||||| Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279 Query 44112 ATATTTGCAT 44121 |||| ||||| Sbjct 253280 ATATCTGCAT 253289 >seq2544 Length=277 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| |||||| | ||| |||| ||||| || || || ||||| Sbjct 246 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGCTTACCAGCAAAG 187 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| | || || ||| |||| | |||||| |||||| |||||| ||| || | Sbjct 186 ATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTATCTTGAATTTTAGTTTTAACATTT 127 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | | || || || | ||||||||||| || || | ||| || ||| Sbjct 126 TCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACA 67 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 66 AATATTTGCAT 56 >seq31 Length=1439309 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| || |||||||| || || ||||| |||||||||||||| Sbjct 961508 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961567 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||||||||| ||||| ||||| |||||||| || |||| Sbjct 961568 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 961627 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| || || || | | | ||||||| | || || Sbjct 961628 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAACT 961687 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || |||| || || ||||| || |||||| Sbjct 961688 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATG 961735 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| || ||||| || || || |||||||| ||||| ||||| Sbjct 960531 CCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAG 960590 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||||||||| ||||| ||||| |||||||| || |||| Sbjct 960591 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 960650 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| || ||| || | | | ||||| | | || || Sbjct 960651 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAACT 960710 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 960711 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| || |||||||| || || ||||| |||||||||||||| Sbjct 960987 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961046 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | ||||||||| ||||| ||||| || ||||| || |||| Sbjct 961047 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 961106 Query 44015 ACACCTTCTTTATCTGAAATTTT 44037 | |||||||||||| |||||| Sbjct 961107 ATTCCTTCTTTATCTTGAATTTT 961129 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | ||| || |||||||| || || ||||| |||||||||||||| Sbjct 961280 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961339 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || | |||||| || ||||| ||||| ||||| ||||| | || Sbjct 961340 AGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 961399 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||| || || || | | | ||||| | | || || Sbjct 961400 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACG 961459 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 961460 TCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 961506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| | | | |||| || | ||||||||| ||||| Sbjct 964792 TCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAA 964851 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || | || | || ||||||||| ||| || || || | Sbjct 964852 ATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGCCTTTACATTC 964911 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | || |||| | || || || | || || ||||| || ||||||||||| ||| Sbjct 964912 TCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTTAAAGTCTTAACA 964971 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 964972 AAGATCTGCAT 964982 >seq1683 Length=220 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||| ||||||||||| | ||| |||| |||| ||||| || ||||| Sbjct 189 TCTTTTTGGATATTATAATCAGAAAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAA 130 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| | ||| ||||| | || | ||||||||| ||| |||||| || || | Sbjct 129 ATCAATCTTTGTTGGTCAGGGGGAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTT 70 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | | || || || | ||||| ||||| || || | |||||| || Sbjct 69 TCAATAGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCTGTAAGAGTCTTGACG 10 Query 44111 AATATTTGC 44119 || |||||| Sbjct 9 AAAATTTGC 1 >seq65 Length=484858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 44017 ACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATC 44076 ||||||||||||| ||||||| ||| || | ||| |||||||| | || || || Sbjct 16891 ACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCTGATGCTTCGACTTC 16832 Query 44077 GACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCT 44130 | ||||| ||||| || |||| ||||||||||||||| |||||| || ||| Sbjct 16831 AAGAGTAATAGTTTTGCCAGTTAGAGTCTTCACAAATATCTGCATGGTGAATCT 16778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354760131637920