Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq50 105 6e-18 >seq50 Length=3512070 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||| || || || || |||||| || || |||||||| |||| ||||| Sbjct 996123 TCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 996182 Query 13235 ATCCAAAATATAGCAGC-AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || |||||||| |||| | | | ||| ||| || ||||| ||||| ||||| || Sbjct 996183 AACCAGAAAATAGCAGCGAAACTACCACTAAAGAAA-ATACCTTCTACTGCAGCAAAAGC 996241 Query 13294 TATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGC 13353 | || | |||| | | ||| | ||| | | |||||| ||| ||||| | || Sbjct 996242 AACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAGC 996301 Query 13354 TTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 ||||| | ||| || || |||||| || ||||||||||| Sbjct 996302 TTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAATAA 996343 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| || ||||| || || || ||||||||||||||||| ||||||||| || | ||| Sbjct 996445 AATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTG 996504 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 |||||||| ||||| | ||||||| || || ||||| || | ||||| ||| | | Sbjct 996505 AAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT-AAATCGTTCAACAA 996563 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC-AAG-TATGTGCTTAATAAA 13596 || || || || || || ||| ||| |||||||| || ||| ||| | | ||||| Sbjct 996564 GATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGAT--ATAAA 996621 Query 13597 ttttttttC 13605 | |||||| Sbjct 996622 ATGTTTTTC 996630 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | ||| |||||||||| |||||||| || |||||||| ||||||| Sbjct 995608 TTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATG 995667 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 |||||| ||||| || ||||||| Sbjct 995668 TTCCATGAAATCAAACGGATTTT 995690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430961179504080