Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq205 154 2e-32 seq4 129 7e-25 >seq205 Length=424314 Score = 154 bits (170), Expect = 2e-32 Identities = 222/310 (72%), Gaps = 6/310 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| || |||||||| | |||||||| ||| ||||||| || |||||| Sbjct 262075 ATTGGGATTTTCAAAAAATGGGAATTGGTGGACTGGATAAAGAATTTACTGCTATTTTTC 262134 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||| ||||| || || |||| || || | | | ||||||| ||||||| Sbjct 262135 GAAGAGCCTTTGCATCCCGAGTTTTTCCGCCAGAGATTGTTACACAATTAGGTTGTAAAC 262194 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || || || ||||||||||||||| || Sbjct 262195 ATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCTAGAC 262254 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || ||||||||||||||||||| || | | Sbjct 262255 AAATAG-GAACTATGTTAAATGCTAGAGAACC--TAAAATTGTTAATGGTCCTCAAATCT 262311 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| || || ||||| ||| |||||| || ||| || ||||||| Sbjct 262312 TGGATAAATATGTCGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCTGAAG 262371 Query 164690 AAGAACAAAA 164699 | ||| |||| Sbjct 262372 AGGAAGAAAA 262381 Score = 125 bits (138), Expect = 9e-24 Identities = 155/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT-- 164772 |||| ||||||| | ||| |||||||||| || |||||| |||| || || ||| Sbjct 262474 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAGTCTCGAGGTAG 262533 Query 164773 -------GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | ||||| |||||||| | || || ||||| || ||| | ||||| || Sbjct 262534 TGTGGCTGGTAATACAGGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGA 262593 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||||||| |||||||||||| | || | |||||||| || ||| ||| | || Sbjct 262594 TGGTGTAGAACAATTAAATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGAT 262653 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 ||||| || ||||||||||||||| ||||||| Sbjct 262654 AGATGAAGCCTTATTACGACCTGGTAGATTAGA 262686 >seq4 Length=912327 Score = 129 bits (142), Expect = 7e-25 Identities = 171/237 (72%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 7175 TATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||| | || |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 866776 TATATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTT 866717 Query 7235 CACGATGATTAAATCCTAATCGATTTAAATTAGATTT----TGATCCATAAGCATCCCAA 7290 | | || |||| || | || || ||| | ||| | || ||||||||| Sbjct 866716 CCCTATCTGTAAAACCACAAGAATCTA----AGAACTCACGTGAACTATTTGCATCCCAA 866661 Query 7291 ATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAA 7350 ||||| ||| ||||| || || | |||||| |||||||||| |||||||| Sbjct 866660 ATATGAACATCTTTTTCGCTTAGTTTCTTTGCATTTGTGGATCCTTTAATAAACCATAAC 866601 Query 7351 AGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGTA 7407 | ||| || |||| || |||||| | | ||||||||| ||||| || ||| || Sbjct 866600 AATTCCTCCACTACACCTTTCCAAAATACGCGTTTTGTAGTTAATAATGGAAATATA 866544 Score = 107 bits (118), Expect = 2e-18 Identities = 180/255 (71%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 || || | || ||| |||| || | |||||| || | |||||| |||||||| | ||| Sbjct 867135 TGTGCCAGTATATAAATTAACAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCC 867076 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT---ATTGTCTATAGCATAAAAT 7014 ||||| || |||||||||| ||| || ||||| |||| || |||||||| Sbjct 867075 ATATCCGCACTTCTTTGATAAAGTTGGCATGATAATTCTTCATTGCTTA---CATAAAAT 867019 Query 7015 TGACACAATAC-ATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCA 7070 ||| |||| || |||||| |||||||| |||| | | ||||| ||||||||| Sbjct 867018 TGA-ACAAAACAATGACAAGGAGGTAA---AGCCATTTTTGGAATATCGATTGGATTCCA 866963 Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTG 7130 || ||||||| ||| | ||||||||| ||| | || || ||||| | || Sbjct 866962 TGCTGTCATTATAATTCTTCTATCATTGGGAGAATATCGTATCTTATCTATAACTTCTTT 866903 Query 7131 TAATTGATCTATACC 7145 ||||||||| ||||| Sbjct 866902 TAATTGATCAATACC 866888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595841908464000