Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq199 324 8e-84 >seq199 Length=2136992 Score = 324 bits (358), Expect = 8e-84 Identities = 583/841 (69%), Gaps = 21/841 (2%) Strand=Plus/Minus Query 3550 TGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGATTG-AATG 3608 |||||| |||||||| || || ||| ||| ||||| | ||||| ||| | || Sbjct 1030307 TGCTGTTAAAATGGCTAATATAGATAGAGCATGTAATTTTATGTTTACT-GATAGGAAAC 1030249 Query 3609 AT---GGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCA 3665 || ||| |||||| ||| |||||||||| || ||||| ||||| ||||||||||||| Sbjct 1030248 ATTTGGGAAAAAATGAGTTGTTATATTTTGCAGATGTATGTGCTGGACCAGGTGGTTTCA 1030189 Query 3666 GTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCG 3725 |||||||| | | ||||||| |||||| || ||||| | |||| | || || | Sbjct 1030188 GTGAATATGTTCTTTGGAGAACAAAATGGCATGCTAAAGGATTTGGTTTTACATT--GAA 1030131 Query 3726 aaa--aaaaTGATTTTCAACTGAACAGATTTT-ACGATAACTTTTCGGAAACTTTACACC 3782 ||| ||||||| ||| || | | | |||||| | | | | | | ||||| || || | Sbjct 1030130 AAATGAAAATGACTTTAAATT-AGCTGATTTTTATGCTGGTTCTCCTGAAACATTTCATC 1030072 Query 3783 CGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTT 3842 | |||||||| || | ||||| || ||| |||| ||||||| | | ||| Sbjct 1030071 CATATTATGGACCAAAAGATAATGGTGATGTCTTTGATTCTGAAAATCAAAGAACATTTA 1030012 Query 3843 GTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTG 3902 | ||| | || |||||| | || | ||||| ||||||||||||||| |||| |||| Sbjct 1030011 GAGAACTTATAATGAAATACACTCATAATAAAGGAGTACATTTTATGATGTCTGATGGTG 1029952 Query 3903 GGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGT 3962 | ||||| |||||||| ||||||| | |||||||| | || ||| | ||||| | | Sbjct 1029951 GTTTCTCTGTTGAGGGAAAAGAAAACCTACAAGAAATTCTTTCAAAACAATTGTATCTTT 1029892 Query 3963 GTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTT 4022 ||||||||||| | ||||| ||||| || || ||||||| ||||| ||||| | Sbjct 1029891 GTCAATGTTTAGTGGCATTAATGATAGTAAGAGAGAAAGGTCATTTTGTTACGAAATTAT 1029832 Query 4023 TCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATC 4082 | || ||||||||||| ||||||||||||||| | ||||| |||||| ||| |||| | Sbjct 1029831 TTGACATATTTACACCCTTTAGTGCTGGTTTAATCTATTTAATGTATCGATGTTTTGACG 1029772 Query 4083 GTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGT 4142 ||||||||||| |||||| | || || |||| || ||||| ||| | ||||| | | Sbjct 1029771 AAATTTGTATTTTTAAACCAAACTCTTCTAGACCAGCAAATTCAGAACGTTATTTAATAT 1029712 Query 4143 GTTTGAGCAAACTTTCGAACGTGTCAGA---CGTGATAACATATTTGTCAGAAATAAACG 4199 || || |||| | | | |||| || | | |||||| |||| || Sbjct 1029711 GTAAAAGTAAAC---GGCCTGGGACAGAAATTGTTACACAATATTTTAATAAAATTAATC 1029655 Query 4200 AAAAGATATCGACAAACGATCGTGATAACGACGTCACACAAATAGTGTCTCTGAATGAGT 4259 | | ||| || ||| |||| || || | |||| ||||||| | |||| | Sbjct 1029654 ATTTGCTATTAGATAATGATGAAAATAATGATGTTATACAATTAGTGTCATTTGATGAAT 1029595 Query 4260 TTGAATACG--AAACATGTTTTAAAAAATTTTTGATCGATTCAAACAACGATATCGGGAA 4317 | ||| | | |||||| |||| || |||| | | ||| || | || | || || Sbjct 1029594 TAGAAAAAGAAAAACATTTTTTGCAATATTTACG--CACTTCTAATGAGTATTTAGGAAA 1029537 Query 4318 TAATCAAATAACGGCTTTATCGAAAATATTTGCATTCTGTAACGATATCAATCTTGTTGA 4377 || ||||||| | | ||| ||||| |||||| ||| | |||| | ||||||||| Sbjct 1029536 GAAACAAATAATAGGTCTATGCAAAATTGCTGCATTTTGTGAAGATAATACTCTTGTTGA 1029477 Query 4378 A 4378 | Sbjct 1029476 A 1029476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276539983192120