Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24]
4,040 sequences; 230,340,171 total letters
Query= NC_005905.1
Length=86462
Score E
Sequences producing significant alignments: (Bits) Value
seq199 324 8e-84
>seq199
Length=2136992
Score = 324 bits (358), Expect = 8e-84
Identities = 583/841 (69%), Gaps = 21/841 (2%)
Strand=Plus/Minus
Query 3550 TGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGATTG-AATG 3608
|||||| |||||||| || || ||| ||| ||||| | ||||| ||| | ||
Sbjct 1030307 TGCTGTTAAAATGGCTAATATAGATAGAGCATGTAATTTTATGTTTACT-GATAGGAAAC 1030249
Query 3609 AT---GGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCA 3665
|| ||| |||||| ||| |||||||||| || ||||| ||||| |||||||||||||
Sbjct 1030248 ATTTGGGAAAAAATGAGTTGTTATATTTTGCAGATGTATGTGCTGGACCAGGTGGTTTCA 1030189
Query 3666 GTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCG 3725
|||||||| | | ||||||| |||||| || ||||| | |||| | || || |
Sbjct 1030188 GTGAATATGTTCTTTGGAGAACAAAATGGCATGCTAAAGGATTTGGTTTTACATT--GAA 1030131
Query 3726 aaa--aaaaTGATTTTCAACTGAACAGATTTT-ACGATAACTTTTCGGAAACTTTACACC 3782
||| ||||||| ||| || | | | |||||| | | | | | | ||||| || || |
Sbjct 1030130 AAATGAAAATGACTTTAAATT-AGCTGATTTTTATGCTGGTTCTCCTGAAACATTTCATC 1030072
Query 3783 CGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTT 3842
| |||||||| || | ||||| || ||| |||| ||||||| | | |||
Sbjct 1030071 CATATTATGGACCAAAAGATAATGGTGATGTCTTTGATTCTGAAAATCAAAGAACATTTA 1030012
Query 3843 GTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTG 3902
| ||| | || |||||| | || | ||||| ||||||||||||||| |||| ||||
Sbjct 1030011 GAGAACTTATAATGAAATACACTCATAATAAAGGAGTACATTTTATGATGTCTGATGGTG 1029952
Query 3903 GGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGT 3962
| ||||| |||||||| ||||||| | |||||||| | || ||| | ||||| | |
Sbjct 1029951 GTTTCTCTGTTGAGGGAAAAGAAAACCTACAAGAAATTCTTTCAAAACAATTGTATCTTT 1029892
Query 3963 GTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTT 4022
||||||||||| | ||||| ||||| || || ||||||| ||||| ||||| |
Sbjct 1029891 GTCAATGTTTAGTGGCATTAATGATAGTAAGAGAGAAAGGTCATTTTGTTACGAAATTAT 1029832
Query 4023 TCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATC 4082
| || ||||||||||| ||||||||||||||| | ||||| |||||| ||| |||| |
Sbjct 1029831 TTGACATATTTACACCCTTTAGTGCTGGTTTAATCTATTTAATGTATCGATGTTTTGACG 1029772
Query 4083 GTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGT 4142
||||||||||| |||||| | || || |||| || ||||| ||| | ||||| | |
Sbjct 1029771 AAATTTGTATTTTTAAACCAAACTCTTCTAGACCAGCAAATTCAGAACGTTATTTAATAT 1029712
Query 4143 GTTTGAGCAAACTTTCGAACGTGTCAGA---CGTGATAACATATTTGTCAGAAATAAACG 4199
|| || |||| | | | |||| || | | |||||| |||| ||
Sbjct 1029711 GTAAAAGTAAAC---GGCCTGGGACAGAAATTGTTACACAATATTTTAATAAAATTAATC 1029655
Query 4200 AAAAGATATCGACAAACGATCGTGATAACGACGTCACACAAATAGTGTCTCTGAATGAGT 4259
| | ||| || ||| |||| || || | |||| ||||||| | |||| |
Sbjct 1029654 ATTTGCTATTAGATAATGATGAAAATAATGATGTTATACAATTAGTGTCATTTGATGAAT 1029595
Query 4260 TTGAATACG--AAACATGTTTTAAAAAATTTTTGATCGATTCAAACAACGATATCGGGAA 4317
| ||| | | |||||| |||| || |||| | | ||| || | || | || ||
Sbjct 1029594 TAGAAAAAGAAAAACATTTTTTGCAATATTTACG--CACTTCTAATGAGTATTTAGGAAA 1029537
Query 4318 TAATCAAATAACGGCTTTATCGAAAATATTTGCATTCTGTAACGATATCAATCTTGTTGA 4377
|| ||||||| | | ||| ||||| |||||| ||| | |||| | |||||||||
Sbjct 1029536 GAAACAAATAATAGGTCTATGCAAAATTGCTGCATTTTGTGAAGATAATACTCTTGTTGA 1029477
Query 4378 A 4378
|
Sbjct 1029476 A 1029476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 276539983192120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |