Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq981 118 6e-22 seq99 114 7e-21 seq170 113 2e-20 seq523 107 1e-18 seq117 96.9 2e-15 >seq981 Length=182776 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 36574 AAAAAAT-AATTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 36516 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 36515 GCTCTAACCAACTGAGCTAATGGGCC 36490 >seq99 Length=495943 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| |||| ||||||||| |||||||||| |||||||||||||||||||| Sbjct 19723 AAAAAAAAAAGAAATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 19782 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGC 11528 ||||||||| ||||||||||||||||||| Sbjct 19783 CGACGCTCTAACCAACTGAGCTAATGGGC 19811 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 46127 TAAAAAAAAAACTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGA 46186 Query 11503 CGCTCTRACCAACTGA 11518 |||||| ||| ||||| Sbjct 46187 CGCTCTAACCTACTGA 46202 >seq170 Length=2448879 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2095715 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2095774 Query 11515 CTGAGCTAATGGGC 11528 |||||||||||||| Sbjct 2095775 CTGAGCTAATGGGC 2095788 >seq523 Length=1410029 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 702498 AAAATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 702439 Query 11512 CAACTGAGCTAATGGGCC 11529 | |||||||||||||||| Sbjct 702438 CTACTGAGCTAATGGGCC 702421 >seq117 Length=1402647 Score = 96.9 bits (106), Expect = 2e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1015219 GGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCTACTGAGCTAATGGG 1015278 Query 11528 CC 11529 || Sbjct 1015279 CC 1015280 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261478324827040