Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq31 145 7e-30 seq108 129 5e-25 seq1683 114 1e-20 seq2544 102 7e-17 >seq31 Length=1439309 Score = 145 bits (160), Expect = 7e-30 Identities = 178/241 (74%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || ||| ||||| || | ||||||||| || || | |||| Sbjct 961500 TTTGCATTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTAT 961559 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | | |||||| ||| || || |||||||| ||||||| |||| |||||| Sbjct 961560 AATC--TGAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTG 961617 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| |||||||| |||||||| || | ||| || ||||| || | | || || | Sbjct 961618 ATCAGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGA 961677 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || |||| ||||||||||||||||| || ||||| ||||| ||||||||| | Sbjct 961678 AGCTTCAACTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATGAT 961737 Query 95011 T 95011 | Sbjct 961738 T 961738 Score = 138 bits (152), Expect = 1e-27 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 94776 ACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAAT 94835 || ||||||||| | || ||| |||||||||| |||||||| ||||| | || |||| Sbjct 960526 ACTCTCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAAT 960585 Query 94836 CGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 | | | |||||| ||| || || |||||||| |||| || |||| ||||||||| Sbjct 960586 C--TAAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATC 960643 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 |||||||| |||||||| || | ||| || || || ||| | | || || | Sbjct 960644 AGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGC 960703 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| || || || ||||||||||||||||| |||||||| ||||| Sbjct 960704 TTCAACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 125 bits (138), Expect = 6e-24 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | || ||| ||||| || | ||||||||| || || | Sbjct 961267 AAAAATTTGCATTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAAT 961326 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | | |||||| ||| || || ||||| || |||| || || | | Sbjct 961327 ATTATAATC--TGAGAGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGT 961384 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || ||||| ||||||||||| | ||| || ||||| ||| | | || Sbjct 961385 TGTTGGTCAGGGGGAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTA 961444 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || ||||||| || || || |||||||| |||||||| |||||||| ||| Sbjct 961445 TCCGAAGCTTCAACGTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGC 961504 Query 95006 AT 95007 || Sbjct 961505 AT 961506 Score = 125 bits (138), Expect = 6e-24 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94771 ATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTT 94830 ||| |||| |||||||| | || |||||| | ||| | |||||||| || || | ||| Sbjct 964084 ATTATACATTCCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTT 964143 Query 94831 ATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||||| | ||| | ||| || || ||||| || |||||||||| | ||| || Sbjct 964144 ATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTG 964203 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||||||| |||||||| || | ||| || || || || | | ||||| | Sbjct 964204 ATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGA 964263 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || ||||| || ||||| |||||||| |||||||| ||||| Sbjct 964264 AGCTTCAACTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGCAT 964320 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867 ||||||||| ||||| | |||||||| | | |||||| | ||| || || |||||| Sbjct 964785 AGTAGATTCTTTTTGAATATTATAATC--TGAGAGTGTTCTACCATCTTCAAGTTGTTTT 964842 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || |||| || || | ||| |||||||| ||||| || ||||| || | ||| || ||| Sbjct 964843 CCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTAGCC 964902 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | ||||| | || || || | ||||| |||||||| || | | Sbjct 964903 TTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTTAAA 964962 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || |||||||||||||| Sbjct 964963 GTCTTAACAAAGATCTGCAT 964982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || |||||| || || | |||||||||||||| | |||| Sbjct 964314 TTTGCATACCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTAT 964373 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| | ||| | ||| || |||||||| || |||| || || | ||| || | Sbjct 964374 AATCTGAGAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGT 964433 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 | || ||||| ||||||||||| | ||| || Sbjct 964434 CAGGGGGAATTCCTTCTTTGTCTTGAATCTT 964464 >seq108 Length=811940 Score = 129 bits (142), Expect = 5e-25 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| |||||||| ||||| || || || | || ||||| ||||| | Sbjct 250497 AAAAATTTGCATTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAAT 250556 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | ||||| || ||| ||||||||||| || |||| || ||||| Sbjct 250557 ATTATAATCCG--AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTC 250614 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| ||||||||||||||||| || | |||||| | ||| || | | ||| Sbjct 250615 TGTTGATCGGGAGGAATACCTTCTTTATCCTGAATTTTAGTCTTAACATTTTCAATAGTA 250674 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || || |||||||| |||||||| || || || || ||| Sbjct 250675 TCGGATGCTTCAACTTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGC 250734 Query 95006 AT 95007 || Sbjct 250735 AT 250736 Score = 125 bits (138), Expect = 6e-24 Identities = 177/247 (72%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 251181 AAAAATTTGCATTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAAT 251240 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| ||| ||| | ||| || || ||||| || ||||||| |||||| Sbjct 251241 ATTATAATCAG--ATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTT 251298 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| ||||| ||||| | |||||| || || || | | || Sbjct 251299 TGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTA 251358 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || || ||||| || || | ||||| |||||||||||| Sbjct 251359 TCTGAGGCCTCTACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGC 251418 Query 95006 ATGCTTA 95012 ||| ||| Sbjct 251419 ATGATTA 251425 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | |||||||| | ||||| | ||| |||| Sbjct 249022 GTGAAGAGTCGATTCTTTTTGAATATTATAATCAG--AAAGTGTACGTCCATCTTCCAAT 249079 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 |||||||| ||||||| ||||| || ||||| |||||||||||||||||||| | |||| Sbjct 249080 TGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATT 249139 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 ||||| || || | | ||||| | || || |||| || || ||||| || Sbjct 249140 TTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCC 249199 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||| || ||||| Sbjct 249200 GTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 109 bits (120), Expect = 5e-19 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | | |||||| || | || | |||||||| ||||| | Sbjct 250954 AAAATTTGCATACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATA 251013 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 |||||||| | ||||| || ||| |||| |||||||| |||| || ||||| | Sbjct 251014 TTATAATCAG--AAAGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCT 251071 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| ||||||||||||||||| || | |||||| || || || | | || | Sbjct 251072 GTTGATCGGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTAT 251131 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | || || |||||||||||||| ||||| ||||| || |||| Sbjct 251132 CTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCA 251191 Query 95007 T 95007 | Sbjct 251192 T 251192 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | | |||||| || | || | |||||||| ||||| | Sbjct 249214 AAAAATTTGCATACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGAT 249273 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||||||| | || || || ||| |||| |||||| || ||||||| | ||| Sbjct 249274 ATTATAATCGG--AAAGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTC 249331 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || || ||||||||||||||||| | ||||||||| || || | | | Sbjct 249332 TGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCA 249391 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| || || |||| || || ||||| || || ||||| || ||||| || ||| Sbjct 249392 TCATAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGC 249451 Query 95006 AT 95007 || Sbjct 249452 AT 249453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| ||||| | || |||||| | ||| | ||| |||| |||||||| Sbjct 250768 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAATTGTTTTCCA 250827 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| ||||| || || || |||||||||||||||||||| | ||| || || || Sbjct 250828 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTT 250887 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | || || |||| || || || ||||| ||||||||| Sbjct 250888 ACATTTTCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCTTTCCCGTAAGAGTT 250947 Query 94991 TTCACAAAGATCTGCAT 95007 || || || || ||||| Sbjct 250948 TTGACGAAAATTTGCAT 250964 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | | |||||| || | || | |||||||| ||||| | Sbjct 249442 AAAAATTTGCATACCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAAT 249501 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || |||||| | || || || ||| |||| |||||| || ||||||| | ||| Sbjct 249502 ATTGTAATCGG--AAAGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTC 249559 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || || || ||||||||||||||||| | ||||||||| || || Sbjct 249560 TGTTGGTCAGGCGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTAC 249606 >seq1683 Length=220 Score = 114 bits (126), Expect = 1e-20 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| || | || | |||||||| ||||| | |||||||| | || || || Sbjct 214 TCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAG--AAAGAGTACGA 157 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| ||||||||||| || |||| || |||||||| || || || |||||||||||| Sbjct 156 CCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCTTCT 97 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 ||||| | |||||| ||||| || | | ||| |||| || || |||| || Sbjct 96 TTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAGAGTA 37 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || |||||||| |||||||| || || || || ||| Sbjct 36 ATAGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGC 1 >seq2544 Length=277 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| || | || | |||||||| ||||| | || |||||| | ||| | Sbjct 271 TCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCC 212 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || ||||||| | ||| || ||||| |||||||||||||| || Sbjct 211 ATCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTT 152 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||| | || || | | || |||| || || || | || || Sbjct 151 ATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAAT 92 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||||||||| ||||| || ||||| Sbjct 91 TGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448268561294400