Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq484 178 2e-40 seq303 176 7e-40 >seq484 Length=977448 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| || ||||| ||||| || Sbjct 320561 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATTACCAAACCAGCCATT 320502 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || |||||| | ||||||||| |||| ||||| | Sbjct 320501 CGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATTTCTGGATTGATCTACGAAGAAACA 320442 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | | | ||||||| ||||| || || || ||| Sbjct 320441 CGAGGTGTACTGAAGGTATTCTTGGAAAATGTTATCCGAGATGCCGTCACTTACACTGAG 320382 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | |||||||| || |||||||| | || || || ||||| |||||||| Sbjct 320381 CATGCCAAAAGGAAGACTGTAACTGCCATGGATGTAGTTTACGCTTTGAAGCGTCAAGGA 320322 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| |||||||| |||||| Sbjct 320321 AGAACCCTTTACGGTTTTGGTGGTTAAT 320294 >seq303 Length=714531 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||||| |||||||||||||| ||||| || ||||| || Sbjct 462302 GCAAAGCGTCATAGAAAAGTACTTCGTGATAACATCCAAGGTATCACAAAACCAGCAATT 462361 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | ||||||||||| || || || ||| | ||||| || | |||||||| | | Sbjct 462362 CGTCGATTAGCTCGTCGTGGCGGTGTTAAACGTATATCTGGTTTAATTTATGAAGAAACT 462421 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||||||||| | ||| | | | ||||||| ||||| | || || || Sbjct 462422 CGCGGTGTTTTGAAAGTTTTCTTAGAAAATGTTATCCGCGATGCAGTTACTTACACTGAA 462481 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || ||||| || | |||||| |||| ||||| ||||| | ||||| Sbjct 462482 CACGCCAAACGGAAAACTGTAACAGCTATGGATGTCGTATATGCTCTGAAAAGACAAGGA 462541 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||||||||||||| ||||| Sbjct 462542 CGTACTCTTTATGGTTTTGGAGGTTAA 462568 Score = 105 bits (116), Expect = 1e-18 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||||||||| || |||||||| ||||| || ||||| || || | || | | ||| Sbjct 455266 CTTCGAGATAATATTCAAGGAATTACCAAACCTGCTATTCGACGATTAGCAAGAAGAGGT 455325 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || ||| || | || ||||| | |||| || | || | || Sbjct 455326 GGTGTTAAGAGAATCAGTGGTTTAATTTACGAAGAAACACGTGGAGTACTAAAAGTATTT 455385 Query 16574 CTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | ||||| | ||||| || || ||||| || || |||||| | || ||||| Sbjct 455386 CTCGAAAATGTTATTCGAGATGCAGTTACA-TATACTGAACATGCTAAAAGGAAAACTGT 455444 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT-TATGGTTTTG 16691 || | |||||| | || |||||||| ||||| |||||| | || ||| |||||||| | Sbjct 455445 AACAGCAATGGATGTAGTTTATGCATTAAAACGCCAAGGCAG-AACATTATATGGTTTCG 455503 Query 16692 G 16692 | Sbjct 455504 G 455504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071506199720