Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq50 105 7e-18 >seq50 Length=3512070 Score = 105 bits (116), Expect = 7e-18 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 21271 TTTAAATATNTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATA 21330 |||| | | || |||||||| | |||| | |||||||||||| |||||||| ||||| Sbjct 995786 TTTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATA 995845 Query 21331 TTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAA 21390 ||||||||| | || ||| ||||| || |||| || ||||| | || | ||||||||| Sbjct 995846 TTGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAA 995905 Query 21391 AGATTTTTCTATAGAGACGGCTTC---AACAATT-ATATTTATTATCC--TAGATGTACT 21444 || ||| || ||| || || || |||| || | | | | ||||| | Sbjct 995906 TTCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTT 995965 Query 21445 AGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACC 21498 | |||||| ||||| ||||| |||||||||||||||||||| || || Sbjct 995966 TTG----TACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 996013 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| || || | ||||| || || ||||| | |||||| Sbjct 996469 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTC 996528 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 || ||| || || | |||||||| | | | || ||||| || ||||||||| Sbjct 996529 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGA 996588 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| || | || |||||||| | ||| | | ||||| || || Sbjct 996589 AGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTTTCACTGGCAGTTAAATTATT 996648 Query 21949 CCAATCTAATAAATC 21963 |||||| |||| ||| Sbjct 996649 CCAATCAAATACATC 996663 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||| | |||| ||||||||| || | ||| ||||||| || || |||||||| ||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 || || ||| |||||| |||||||| ||||||||||| || |||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATATATAT 995703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531873939009600