Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq31 129 6e-25 seq108 114 1e-20 seq2544 84.2 2e-11 >seq31 Length=1439309 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| ||||||||||| | ||||| | ||| | ||| | Sbjct 961734 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 961675 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || |||||| || |||||||| || ||||| ||||| Sbjct 961674 GATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 961615 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | | || |||||||| ||||||| |||| || || ||||| Sbjct 961614 CAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAAT 961555 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| |||||||||||| | ||| |||| |||||||| ||||||||| Sbjct 961554 ATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAA 961506 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | |||||||| | || || | ||| | ||| | Sbjct 960986 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960927 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || || |||||| || |||||||| || ||||| ||||| Sbjct 960926 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960867 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | | |||| | |||||||| || ||||||| |||| || || ||||| Sbjct 960866 ACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCTGATTATAA 960807 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| |||||||||||| | |||||||| || ||||| | ||||||| Sbjct 960806 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGCGACTTCGCGGAGGAA 960757 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | || ||| | ||| | ||| | Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| |||||| || |||||||| || ||||| |||||| Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | || |||||||| ||||||| |||| | || |||||| Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| ||||||||||| | || || || |||||||| ||||||||| Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGGAA 964092 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| || || ||||| |||||| | |||||| | ||| | ||| | Sbjct 964985 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGCT 964926 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || ||| | || || |||||| || ||||| || || || || ||| Sbjct 964925 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGAT 964866 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| | | |||| | || |||||||| ||||||| ||||| || || ||| Sbjct 964865 CAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 964806 Query 26946 AACATTCAAAAAGAATCTACTATCCATCT 26974 || |||||||||||||||||| | ||||| Sbjct 964805 AATATTCAAAAAGAATCTACTCTTCATCT 964777 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | |||||||| | || || | || | ||| | Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || || |||||| ||||||||||| || || || || || Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | | |||| | || |||||||| ||||||| |||| || || ||||| Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| |||||||||||| | ||| |||| |||||||| ||||||||| Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAA 961278 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | |||||||| | || || | ||| | ||| | Sbjct 960758 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960699 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || ||| | || ||| |||||| || |||||||| || ||||| ||||| Sbjct 960698 GGATACAATAGAGAACGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960639 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || | |||| | || |||||||| ||||||| |||| || || || || Sbjct 960638 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACAA 960579 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || |||||||||||||| | || |||| |||||||| |||||||| Sbjct 960578 TATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGGA 960530 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || ||||| ||||| || || | |||| | || |||||||| ||| Sbjct 961120 GATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATTTTTGCTGGAAAACAACTTGAA 961061 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| || || ||||| ||||| |||||||||||| | ||| |||| || Sbjct 961060 GATGGAAGAACACTCTCAGATTATAATATTCAGAAAGAATCTACTCTTCATTTGGTATTG 961001 Query 26982 AGACTTAGAGGAGGAA 26997 |||||| ||||||||| Sbjct 961000 AGACTTCGAGGAGGAA 960985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||||||||| || || || || |||||| | | |||| | || ||| Sbjct 964464 AAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAACAACGTTTGATTTTTGCTGGTAAA 964405 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 || || ||||||| |||| || || ||||| || ||||| |||||||| ||||| Sbjct 964404 CAGCTAGAAGATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCAT 964345 Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995 | || |||||||||||||||| Sbjct 964344 TTAGTGTTGAGACTTAGAGGAGG 964322 >seq108 Length=811940 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| |||||| | ||||||||| | || || | ||| | ||| | Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||| || | || ||| || ||| || |||||||| || ||||||||||| Sbjct 251133 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCA 251074 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| ||| | |||| | || |||||| | ||||||| | | | | || ||||| Sbjct 251073 ACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTATAA 251014 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| | ||||| || || ||||| | || || Sbjct 251013 TATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 250966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || |||||| | || || | ||| | ||| || | Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 26829 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | || || || ||| ||| || |||||||| || ||||||||||| Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAA-ATTCAGGATAAAGAAGGTATTCCTCCCGATCA 250618 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGTCAGCGACTATA 26946 ||| ||| | |||| | || ||||| || ||||||| | | | || | | || |||| Sbjct 250617 ACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCG-GATTATA 250559 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | |||||||||||||| || | ||| | || || | | ||||| |||| Sbjct 250558 ATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGAA 250508 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| | || || | ||| | ||| | | Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| |||||| ||||||||||| || ||||| || ||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | || |||||| | ||||||| | | | ||| || || Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || ||||||| || || ||||| | || || Sbjct 250784 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGG 250738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | || || ||| | || || | ||| | ||| | | Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||| ||| ||||||||||| || ||||| |||||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | || |||||| | ||||||| | | | || ||||| Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCTGATTATAAT 249046 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||||| ||| | || || || || Sbjct 249045 ATTCAAAAAGAATCGACTCTTCACCTTGTACT 249014 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | || || ||| | || || | ||| | ||| | | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||| || | || ||| ||| ||| ||||||||||| || || || || ||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || ||||| | ||||||| | | | | ||| ||||| Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||||||||| | ||||| || || ||||| | || || Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTTCGTGGTGG 249227 >seq2544 Length=277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| | ||||||||| | || || | ||| | ||| | Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| || ||| || || ||||| || ||||| |||||| Sbjct 116 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAA 175 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | || || || | ||||||| | | | ||| || || Sbjct 176 CAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 235 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTT 26987 ||||||||||||||||| | ||||| || || ||||| Sbjct 236 ATTCAAAAAGAATCTACACTTCATCTTGTTTTGCGACTT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478638227548800