Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 116 1e-20 >seq4 Length=912327 Score = 116 bits (128), Expect = 1e-20 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | || ||||| || || |||||| || | || || ||| | | ||| Sbjct 866548 TTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATGG 866607 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 |||||| ||| ||||||||||| |||| | |||| |||| | ||||||||| Sbjct 866608 TTTATTAAAGGATCCACAAATGCAAAGAAACTAAGCGAAAAAGATGTTCATATTTGGGAT 866667 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGAT 111494 | |||| | |||||||| || ||||||| |||| || || | |||||||| ||| Sbjct 866668 GCAAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGGGAAGAAGGAGAT 866727 Query 111495 CTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 | || || |||| |||||||||||| | || ||||||||| Sbjct 866728 TTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCA 866769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303286135159280