Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq31 129 5e-25 seq108 127 2e-24 seq2544 116 3e-21 >seq31 Length=1439309 Score = 129 bits (142), Expect = 5e-25 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | ||||| || | |||||| | ||||| || || Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || ||| |||||| || |||||||| || ||||| |||||| Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | | || || ||||| ||||||| |||| | ||||||||| Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA--CTATAATGAT 24228 ||||| |||||||||||| |||| ||||||| ||| | |||||||| |||||| || Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGGAATGTATAATCAT 964081 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | |||||||| | ||||| | ||||| || || Sbjct 960758 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960699 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || ||| |||||| || |||||||| || ||||| ||||| Sbjct 960698 GGATACAATAGAGAACGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960639 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||||| | || || ||||| ||||||| |||| || ||||| || Sbjct 960638 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAGATTACAA 960579 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||||||||||||| | || || || || ||| | |||||||| Sbjct 960578 TATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGGA 960530 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||||||| | || || | ||||| || || Sbjct 961734 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 961675 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || |||||| || |||||||| || ||||| ||||| Sbjct 961674 GATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 961615 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | | || || ||||| ||||||| |||| || |||||||| Sbjct 961614 CAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAAT 961555 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| ||||||| || || ||| | |||||||| Sbjct 961554 ATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961507 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | |||||||| | ||||| | || || || || Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || |||||| ||||||||||| || || || || || Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||||| | || || ||||| ||||||| |||| || |||||||| Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| ||||||| || || ||| | |||||||| Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961279 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| || || ||||| |||||| | || ||| | ||||| || || Sbjct 964985 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGCT 964926 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| || ||| | || || |||||| || ||||| || || || || ||| Sbjct 964925 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGAT 964866 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | |||||| | || || ||||| ||||||| |||| || |||||| Sbjct 964865 CAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 964806 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTA 24197 || ||||||||||||||||| ||||| || Sbjct 964805 AATATTCAAAAAGAATCTACTCTTCATCTA 964776 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | |||||||| | ||||| | ||||| || || Sbjct 960986 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960927 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | || || |||||| || |||||||| || ||||| ||||| Sbjct 960926 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960867 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||||| | ||||| || || ||||||| |||| || |||||||| Sbjct 960866 ACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCTGATTATAA 960807 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| ||||| | || || || | | |||||| Sbjct 960806 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGCGACTTCGCGGAGGA 960758 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 |||||||| | ||||| | ||||| || || || || || ||| | || || Sbjct 961189 ACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGATACGATAGAGAACGTAAAGGCT 961130 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 || ||| || |||||||| || ||||| ||||| ||| || |||||| | || || Sbjct 961129 AAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATTTTTGCTGGAAAA 961070 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||||| |||| || |||||||| ||||| ||||||||||| ||||| Sbjct 961069 CAACTTGAAGATGGAAGAACACTCTCAGATTATAATATTCAGAAAGAATCTACTCTTCAT 961010 Query 24195 TTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||| | |||||||| Sbjct 961009 TTGGTATTGAGACTTCGAGGAGGA 960986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||||||||| || || || || ||||| | |||||| | || || Sbjct 964464 AAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAACAACGTTTGATTTTTGCTGGTAAA 964405 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || || ||||||| |||| || |||||||| || ||||| ||||||||| | ||| Sbjct 964404 CAGCTAGAAGATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCAT 964345 Query 24195 TTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||| | |||||||| Sbjct 964344 TTAGTGTTGAGACTTAGAGGAGG 964322 >seq108 Length=811940 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| |||||| | ||||||||| | ||||| | ||||| || || Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| || ||| || |||||||| || ||||||||||| Sbjct 251133 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCCGATCA 251074 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||||| | || || ||| | ||||||| | | | |||||||| Sbjct 251073 ACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTATAA 251014 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||||||| ||||| | || || Sbjct 251013 TATTCAAAAAGAATCTACACTTCATCTTGTTTT 250981 Score = 122 bits (134), Expect = 7e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | ||||| | ||||| || || | Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || || ||| ||| || |||||||| || ||||||||||| Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAA-ATTCAGGATAAAGAAGGTATTCCTCCCGATCA 250618 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||||||| |||||| | || || || || |||||| | | | || | | ||||||| Sbjct 250617 ACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCG-GATTATA 250559 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | |||||||||||||| ||| | |||||||| || | |||||||| ||| Sbjct 250558 ATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 250509 Score = 109 bits (120), Expect = 5e-19 Identities = 182/259 (70%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 23962 ATTATATAAGTACTTTTTAGCCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGA 24020 |||| |||| | ||||| || | || ||||| | ||||| |||||||| || || Sbjct 251450 ATTAAATAATTTTTTTTTTTACAGATAATCATGCAGATCTTTGTCAAAACATTGACAGGT 251391 Query 24021 AAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATT 24080 ||| | || || | || || |||||| || ||||| || | || ||| || ||| Sbjct 251390 AAAACAATAACTCTGGAGGTAGAGGCCTCAGATACCATTGAAAATGTAAAAGCGAAAATT 251331 Query 24081 ACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTC 24140 ||||| ||||| || || || ||||| || ||| |||| | | || || ||||| Sbjct 251330 CAAGACAAGGAAGGAATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGTAAACAACTA 251271 Query 24141 GAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| | | | | | | |||||||| ||||||||||| || ||| | |||||||| Sbjct 251270 GAAGATGGACGTA-CATTATCTGATTATAATATTCAAAAAGAGTCAACACTACATTTAGT 251212 Query 24200 GTTAAGATTGAGAGGAGGA 24218 || | |||||||| ||| Sbjct 251211 ATTGCGTTTGAGAGGTGGA 251193 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| | ||||| | ||||| || || | Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| ||| ||| ||||||||||| || ||||| |||||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | | || || ||| | |||||| ||| | || | |||||||| Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACAC-TTTCTGATTATAA 249047 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 |||||||||||||| || |||| Sbjct 249046 TATTCAAAAAGAATCGACTCTTCA 249023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| | ||||| | ||||| || || | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||| || | || ||| ||| ||| ||||||||||| || || || || ||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || || || | ||||||| | | | ||||||||| Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||||||||||||| ||||| | || || Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTT 249242 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || ||||| | ||||| | ||||| || || | Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| |||||| ||||||||||| || ||||| || ||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || || ||| | ||||||| | | | | |||||| || Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||||||||| || Sbjct 250784 ATTCAAAAAGAATCAAC 250768 >seq2544 Length=277 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||||||| | ||||| | ||||| || || Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| || || ||||| || ||||| |||||| Sbjct 116 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAA 175 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || ||||| | ||||||| | | | | |||||| || Sbjct 176 CAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 235 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||||||| ||||| | || || Sbjct 236 ATTCAAAAAGAATCTACACTTCATCTTGTTTT 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429914831026200