Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq43 159 4e-34 seq50 156 5e-33 >seq43 Length=2749190 Score = 159 bits (176), Expect = 4e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158 || || || ||| || ||| ||||| ||| || || || |||||||| | | ||| Sbjct 1504428 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATTCCAAAGATCTCTT 1504487 Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 1504488 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 1504547 Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278 | || || ||||| ||||| || ||||| | ||| ||||||||||| |||||||| ||| Sbjct 1504548 CTTGTATAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCA 1504607 Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62321 |||||||| || ||||||||||| | || ||| |||||||| Sbjct 1504608 GTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 1504650 Score = 143 bits (158), Expect = 3e-29 Identities = 225/315 (71%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || ||||| ||||||||||| | || | | |||||| | |||||| ||||| || Sbjct 1506456 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 1506515 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 1506516 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 1506575 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 1506576 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 1506633 Query 63317 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 | || || || |||||| | || | | || || || || || || ||| Sbjct 1506634 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTA 1506692 Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 63432 || | ||| |||| |||||| || ||||| || || || |||||||| || ||| |||| Sbjct 1506693 ATGAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTT 1506752 Query 63433 AAGTAGAAAACAGCT 63447 || || ||||||||| Sbjct 1506753 AA-TAAAAAACAGCT 1506766 Score = 136 bits (150), Expect = 5e-27 Identities = 267/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| |||||||||||||| ||| || ||| ||||||||||| ||||||||||| | Sbjct 1505077 TACCTATAGGTCTATGTCTAAAATTTGACTTTTTTGCTTCTGGAATGGGATAATAATTGA 1505136 Query 62652 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 ||| |||||||| | |||||| | | |||||| |||| || | | ||||| Sbjct 1505137 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 1505193 Query 62709 GAAAATCAAATCGCCCATCTA------TTACAAACATGTTCAATGCAACAGATGCCAGAT 62762 ||||||||||| || | |||||||||| || | |||| || || | || Sbjct 1505194 GAAAATCAAATGTTTGATTAATAGGATTTACAAACATATTAACAGCAATTGAAGCTAAAT 1505253 Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62822 |||| || || || |||| | | | ||| || | | || || || | |||||||| Sbjct 1505254 TACAGACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTAC 1505313 Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 || || ||||||| |||||| ||||| || ||||| ||| |||||||| | Sbjct 1505314 TTTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTACAATGATCTTTATAAAGCA 1505373 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 | ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| | Sbjct 1505374 TATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 1505433 Query 62943 TTATTATAGATTTGTATCTCTTTTCTCTTTC 62973 || | | | ||| ||||||||| ||| Sbjct 1505434 GAAT--TTGTCGTTTATATCTTTTCTCATTC 1505462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 ||||||| | ||| || || | |||||||||| ||| |||||| |||||| | Sbjct 1505711 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 1505770 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||| || | ||| | | |||| |||||||||||||| |||||||| |||| Sbjct 1505771 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 1505830 Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | ||||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 1505831 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 1505876 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 1506830 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 1506889 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 1506890 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTTAATATCTTCACCATGGATA 1506949 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 1506950 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 1507009 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 1507010 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 1507069 Query 63686 TAAATAAT 63693 ||||| || Sbjct 1507070 TAAATTAT 1507077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||| || || |||| |||| | ||||| ||||||||||| || ||||| ||| Sbjct 1504842 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAACTGGCTTCTAAAGCA 1504901 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||| | ||||| || || | |||| || | ||| ||||| || |||||| Sbjct 1504902 CCATAATACAATGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAAT 1504961 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 1504962 GGATAGCGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 1505011 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 1504159 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 1504218 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||| |||||| || || || || | ||||| |||||||||| ||| | | Sbjct 1504219 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 1504278 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 ||||||| |||||||||| |||||||||| Sbjct 1504279 TTTGTGGTATTTCCCAAACTGTTTTATAAA 1504308 >seq50 Length=3512070 Score = 156 bits (172), Expect = 5e-33 Identities = 161/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 ||||||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 996449 TATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 996508 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 || ||||| || | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 996509 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 996568 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 996569 TCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 996628 Query 33111 TCGTCTGG-TGTTAGTTTATTCCAATCA 33137 || |||| |||| |||||||||||| Sbjct 996629 TC-ACTGGCAGTTAAATTATTCCAATCA 996655 Score = 125 bits (138), Expect = 9e-24 Identities = 106/128 (83%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 ||||||| | |||||||||||||||||||||||| ||||| || || ||||||||||| | Sbjct 996735 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 996794 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGG 33263 ||| || ||| | ||||||| ||||||| |||||||||| |||||||| || ||| Sbjct 996795 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAA-T 996853 Query 33264 ATTGGTTC 33271 | |||||| Sbjct 996854 AATGGTTC 996861 Score = 100 bits (110), Expect = 4e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 ||| ||| |||||| | || ||||| || ||||||||||| |||||||| |||||| Sbjct 995787 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 995846 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 995847 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTCAAAAAT 995906 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TG 32634 ||||||||||| ||| || || | ||||| ||| | ||| ||| | || | Sbjct 995907 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCAGAAGATGGTTTT 995966 Query 32635 GATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 |||||| ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 995967 TGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 996015 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||| ||| | ||| ||| ||| || ||||| ||||| || || | ||||| Sbjct 996121 CCTCATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCTTTT 996180 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || || | || || ||| ||||||||| ||||||||||| ||||| | Sbjct 996181 TTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 996240 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 32859 ||| | | || | || || || ||||| |||||| ||| ||||||| | Sbjct 996241 CAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 996300 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 | || ||| ||||| |||| | || ||||| ||||| Sbjct 996301 CTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAA 996340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| |||||| ||||| ||||| |||||| || || || || |||||||| Sbjct 995596 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 995655 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 ||| || |||| |||||||||||| || ||||| Sbjct 995656 TAAAGAAATATGTTCCATGAAATCAAACGGATT 995688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633600001584000