Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq108 131 1e-25 seq87 127 2e-24 seq31 122 8e-23 seq1683 116 3e-21 seq2544 113 4e-20 >seq108 Length=811940 Score = 131 bits (144), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || |||||| | || || | ||||| || | | | Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || | || || | || ||||||||| ||| ||||||||||| ||||| |||||| Sbjct 249393 GATGCCATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCGCCTGAC 249337 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || ||||| || ||||||| ||| ||| | |||||| Sbjct 249336 CAACAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTAT 249277 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 ||||| ||||||||||| || || ||| Sbjct 249276 AATATCCAAAAAGAATCTACACTTCAT 249250 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || |||||| | || || | ||||| || | || Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || ||||||||| ||| ||||||||||| ||||| ||||| Sbjct 249165 GACACAATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCTCCTGAT 249109 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || |||||||| ||||||| || || | ||||| Sbjct 249108 CAACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCTGATTAT 249049 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||||| || || || Sbjct 249048 AATATTCAAAAAGAATCGACTCTTCA 249023 Score = 122 bits (134), Expect = 8e-23 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || ||| | || || | ||||| || | || Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | |||| ||| || |||||||| ||||| || || || Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAAATTCAG-GATAAAGAAGGTATTCCTCCCGATCA 250618 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATTAC 25175 |||| | | |||||||| || ||||| | ||||||| ||| |||| | || |||| Sbjct 250617 ACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGG--ATTAT 250560 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||||| || ||||||||||| Sbjct 250559 AATATTCAAAAAGAATCAACACTACATTTAGT 250528 Score = 120 bits (132), Expect = 3e-22 Identities = 103/126 (82%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 ||||||||| ||| ||||||||||| ||||| |||||||||||| | | || ||||| Sbjct 249602 AAGCAAAAATTCAA-GACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTTGCT 249544 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || ||||| || ||||||| ||| ||| | |||||||||||||||||||||||| || Sbjct 249543 GGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCTACA 249484 Query 25197 CTACAT 25202 || ||| Sbjct 249483 CTTCAT 249478 Score = 120 bits (132), Expect = 3e-22 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || || | || || | ||||| || | || Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| || | ||| ||||||||||| ||||| |||||| Sbjct 250904 GATACCATTGAA--AATGTAAAAGCCAAGATTCAA-GACAAAGAAGGTATTCCTCCTGAC 250848 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || |||||||| ||||||| || ||| | ||||||| Sbjct 250847 CAACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTAC 250788 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||||||||||||||| || || ||| | || ||| Sbjct 250787 AATATTCAAAAAGAATCAACCCTCCATCTCGTTCTA 250752 Score = 113 bits (124), Expect = 4e-20 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| |||||| | || || | || || ||| | || Sbjct 251420 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTCA 251361 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| ||| ||||| ||||| |||||||| || Sbjct 251360 GATACCATTGAA--AATGTAAAAGCGAAAATTCAA-GACAAGGAAGGAATTCCACCAGAT 251304 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | || ||||| || |||||| ||||||||| || || | ||||| Sbjct 251303 CAGCAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTAT 251244 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || ||||||||||| Sbjct 251243 AATATTCAAAAAGAGTCAACACTACATTTAGT 251212 Score = 111 bits (122), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || || ||| | || || | ||||| || | || Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||| |||| ||| || |||||||| ||||| || || Sbjct 251133 AGATACCATTGAA--AATGTTAAAGCTAAAATTCAG-GATAAAGAAGGTATTCCTCCCGA 251077 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | |||||||| || |||||||| ||||||| ||| || | ||||| Sbjct 251076 TCAACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTA 251017 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||||||| || || ||| Sbjct 251016 TAATATTCAAAAAGAATCTACACTTCAT 250989 >seq87 Length=1479609 Score = 127 bits (140), Expect = 2e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| |||||||| || |||||||| |||||| | ||||| | ||||| || | Sbjct 253292 ACGATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCA 253233 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| || |||| || |||| ||| || |||||||| || |||||||| Sbjct 253232 TCAGATACTATAGAAAATGTGAAAGCTAAAATTCAG-GATAAAGAAGGAATACCACCTGA 253174 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||||||||| || || ||||||||||||| || ||| | || || Sbjct 253173 TCAGCAACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTA 253114 Query 25175 CAATATTCAAAAAG 25188 ||||||||||||| Sbjct 253113 TAATATTCAAAAAG 253100 >seq31 Length=1439309 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || | || ||| | || || || | || Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| | ||| | || | ||| ||||||||||| ||||| ||||||| Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAA-GACAAAGAAGGAATTCCCCCTGACC 961389 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||| ||||||||| | || | ||||| | Sbjct 961388 AACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATA 961329 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| |||||||| || || ||||| || | || || ||||||||| Sbjct 961328 ATATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAA 961278 Score = 118 bits (130), Expect = 9e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || ||||| |||||||| || || ||| | ||||| | ||||| || | Sbjct 964986 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGC 964927 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| || ||| | ||| | || | ||| || ||||| || |||||||| | Sbjct 964926 TTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAA-GATAAAGAGGGAATTCCACCAG 964868 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | |||||||| || |||||| | ||||||| | | || | |||| Sbjct 964867 ATCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATT 964808 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTA 25205 | ||||||||||||||||| || || ||| || Sbjct 964807 ATAATATTCAAAAAGAATCTACTCTTCATCTA 964776 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| ||||| ||||||||||| || | |||||||| || ||||| ||||| Sbjct 964455 GACAAAGAAGGAATTCCCCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAGCTAGAA 964396 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | ||| | ||||| ||||| ||||| ||||| || || ||||||||| | Sbjct 964395 GATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCATTTAGTGTTG 964336 Query 25212 AGGCTAAGAGGAGG 25225 || || |||||||| Sbjct 964335 AGACTTAGAGGAGG 964322 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||| ||||| || ||| | || || || | || ||| | ||||| || Sbjct 960764 CGGAGGAATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGA 960705 Query 25052 GTCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | || || || || ||| | || || || | ||| || |||||||| ||||| | Sbjct 960704 AGCTTCGGATACAATAGAGAACGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTC 960646 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 |||| || || || | |||||||| || |||||| | ||||||| | || | | Sbjct 960645 CTGATCAGCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAG 960586 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||||| ||||||||||| || || || || || | || || |||||||| Sbjct 960585 ATTACAATATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGGA 960530 >seq1683 Length=220 Score = 116 bits (128), Expect = 3e-21 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| || || |||||| | || || ||| | || || | ||||| || | ||||| Sbjct 1 GCAAATTTTCGTCAAGACTCTTACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGA 60 Query 25061 CACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119 ||||| || | ||| | |||| ||| ||||||||||| ||||| |||||||||| Sbjct 61 TACTATTGAAAATGTTAAGGCTAAAATTCAA-GACAAAGAAGGTATTCCCCCTGACCAAC 119 Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 | | | |||||||| || ||||| | ||||||| ||| ||| | ||||| |||| Sbjct 120 AAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCTGATTATAATA 179 Query 25180 TTCAAAAAGAATCCACGCTACAT 25202 | ||||||||||| || || ||| Sbjct 180 TCCAAAAAGAATCTACACTTCAT 202 >seq2544 Length=277 Score = 113 bits (124), Expect = 4e-20 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| ||| | || || ||| | || || | ||||| || | ||| Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || || | |||| ||| || || ||||| ||||| || || Sbjct 116 GATACAATTGAA--AATGTTAAAACTAAAATTCAA-GATAAGGAAGGTATTCCTCCGGAT 172 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || || || || ||||||| || ||| | ||||||| Sbjct 173 CAACAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTAC 232 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||||||| || || ||| Sbjct 233 AATATTCAAAAAGAATCTACACTTCAT 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433306664012600