Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24]
4,040 sequences; 230,340,171 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq108 131 1e-25
seq87 127 2e-24
seq31 122 8e-23
seq1683 116 3e-21
seq2544 113 4e-20
>seq108
Length=811940
Score = 131 bits (144), Expect = 1e-25
Identities = 155/207 (75%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||| | || |||||| | || || | ||||| || | | |
Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| | || || | || ||||||||| ||| ||||||||||| ||||| ||||||
Sbjct 249393 GATGCCATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCGCCTGAC 249337
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| | | || ||||| || ||||| || ||||||| ||| ||| | ||||||
Sbjct 249336 CAACAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTAT 249277
Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202
||||| ||||||||||| || || |||
Sbjct 249276 AATATCCAAAAAGAATCTACACTTCAT 249250
Score = 129 bits (142), Expect = 5e-25
Identities = 154/206 (75%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||| | || |||||| | || || | ||||| || | ||
Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || | || ||||||||| ||| ||||||||||| ||||| |||||
Sbjct 249165 GACACAATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCTCCTGAT 249109
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| | | || ||||| || |||||||| ||||||| || || | |||||
Sbjct 249108 CAACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCTGATTAT 249049
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
||||||||||||||||| || || ||
Sbjct 249048 AATATTCAAAAAGAATCGACTCTTCA 249023
Score = 122 bits (134), Expect = 8e-23
Identities = 157/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| | || || ||| | || || | ||||| || | ||
Sbjct 250736 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATTACTTTAGAAGTTGAAGCATCC 250677
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || | ||| | |||| ||| || |||||||| ||||| || || ||
Sbjct 250676 GATACTATTGAAAATGTTAAGACTAAAATTCAG-GATAAAGAAGGTATTCCTCCCGATCA 250618
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATTAC 25175
|||| | | |||||||| || ||||| | ||||||| ||| |||| | || ||||
Sbjct 250617 ACAGAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGG--ATTAT 250560
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||||||||||||||| || |||||||||||
Sbjct 250559 AATATTCAAAAAGAATCAACACTACATTTAGT 250528
Score = 120 bits (132), Expect = 3e-22
Identities = 103/126 (82%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136
||||||||| ||| ||||||||||| ||||| |||||||||||| | | || |||||
Sbjct 249602 AAGCAAAAATTCAA-GACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTTGCT 249544
Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196
|| ||||| || ||||||| ||| ||| | |||||||||||||||||||||||| ||
Sbjct 249543 GGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCTACA 249484
Query 25197 CTACAT 25202
|| |||
Sbjct 249483 CTTCAT 249478
Score = 120 bits (132), Expect = 3e-22
Identities = 158/216 (73%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| | || || || | || || | ||||| || | ||
Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || | || |||| || | ||| ||||||||||| ||||| ||||||
Sbjct 250904 GATACCATTGAA--AATGTAAAAGCCAAGATTCAA-GACAAAGAAGGTATTCCTCCTGAC 250848
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| | | || ||||| || |||||||| ||||||| || ||| | |||||||
Sbjct 250847 CAACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTAC 250788
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
||||||||||||||||| || || ||| | || |||
Sbjct 250787 AATATTCAAAAAGAATCAACCCTCCATCTCGTTCTA 250752
Score = 113 bits (124), Expect = 4e-20
Identities = 154/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || ||||| |||||| | || || | || || ||| | ||
Sbjct 251420 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTCA 251361
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || | || |||| |||| ||| ||||| ||||| |||||||| ||
Sbjct 251360 GATACCATTGAA--AATGTAAAAGCGAAAATTCAA-GACAAGGAAGGAATTCCACCAGAT 251304
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || | | || ||||| || |||||| ||||||||| || || | |||||
Sbjct 251303 CAGCAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTAT 251244
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207
|||||||||||||| || || |||||||||||
Sbjct 251243 AATATTCAAAAAGAGTCAACACTACATTTAGT 251212
Score = 111 bits (122), Expect = 1e-19
Identities = 151/208 (73%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| || || | || || ||| | || || | ||||| || | ||
Sbjct 251193 AATGCAAATTTTTGTCAAAACACTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 251134
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||| |||| ||| || |||||||| ||||| || ||
Sbjct 251133 AGATACCATTGAA--AATGTTAAAGCTAAAATTCAG-GATAAAGAAGGTATTCCTCCCGA 251077
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||| | | |||||||| || |||||||| ||||||| ||| || | |||||
Sbjct 251076 TCAACAGAGATTGATTTTTGCTGGAAAACAATTGGAAGATGGTCGTACACTTTCTGATTA 251017
Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202
||||||||||||||||| || || |||
Sbjct 251016 TAATATTCAAAAAGAATCTACACTTCAT 250989
>seq87
Length=1479609
Score = 127 bits (140), Expect = 2e-24
Identities = 146/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| |||||||| || |||||||| |||||| | ||||| | ||||| || |
Sbjct 253292 ACGATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCA 253233
Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || ||||| || |||| || |||| ||| || |||||||| || ||||||||
Sbjct 253232 TCAGATACTATAGAAAATGTGAAAGCTAAAATTCAG-GATAAAGAAGGAATACCACCTGA 253174
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| || || |||||||||| || || ||||||||||||| || ||| | || ||
Sbjct 253173 TCAGCAACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTA 253114
Query 25175 CAATATTCAAAAAG 25188
|||||||||||||
Sbjct 253113 TAATATTCAAAAAG 253100
>seq31
Length=1439309
Score = 122 bits (134), Expect = 8e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| || ||| | || || || | || ||| | || || || | ||
Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| | ||| | || | ||| ||||||||||| ||||| |||||||
Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAA-GACAAAGAAGGAATTCCCCCTGACC 961389
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | |||||||| || |||||| ||||||||| | || | ||||| |
Sbjct 961388 AACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATA 961329
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||||| |||||||| || || ||||| || | || || |||||||||
Sbjct 961328 ATATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGAA 961278
Score = 118 bits (130), Expect = 9e-22
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || ||||| |||||||| || || ||| | ||||| | ||||| || |
Sbjct 964986 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGC 964927
Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| || ||| | ||| | || | ||| || ||||| || |||||||| |
Sbjct 964926 TTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAA-GATAAAGAGGGAATTCCACCAG 964868
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| ||||| || | |||||||| || |||||| | ||||||| | | || | ||||
Sbjct 964867 ATCAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATT 964808
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTA 25205
| ||||||||||||||||| || || ||| ||
Sbjct 964807 ATAATATTCAAAAAGAATCTACTCTTCATCTA 964776
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||||||||| ||||| ||||||||||| || | |||||||| || ||||| |||||
Sbjct 964455 GACAAAGAAGGAATTCCCCCTGACCAACAACGTTTGATTTTTGCTGGTAAACAGCTAGAA 964396
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| | ||| | ||||| ||||| ||||| ||||| || || ||||||||| |
Sbjct 964395 GATGGAAGAACTCTCTCAGATTATAATATCCAAAAGGAATCTACACTCCATTTAGTGTTG 964336
Query 25212 AGGCTAAGAGGAGG 25225
|| || ||||||||
Sbjct 964335 AGACTTAGAGGAGG 964322
Score = 107 bits (118), Expect = 2e-18
Identities = 167/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051
|||| ||||||||| ||||| || ||| | || || || | || ||| | ||||| ||
Sbjct 960764 CGGAGGAATGCAAATCTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGA 960705
Query 25052 GTCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
| || || || || ||| | || || || | ||| || |||||||| ||||| |
Sbjct 960704 AGCTTCGGATACAATAGAGAACGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTC 960646
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
|||| || || || | |||||||| || |||||| | ||||||| | || | |
Sbjct 960645 CTGATCAGCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTTAG 960586
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|||||||||| ||||||||||| || || || || || | || || ||||||||
Sbjct 960585 ATTACAATATCCAAAAAGAATCTACACTGCACTTGGTATTGAGACTTCGAGGAGGA 960530
>seq1683
Length=220
Score = 116 bits (128), Expect = 3e-21
Identities = 149/203 (73%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060
|||||| || || |||||| | || || ||| | || || | ||||| || | |||||
Sbjct 1 GCAAATTTTCGTCAAGACTCTTACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGA 60
Query 25061 CACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAAC 25119
||||| || | ||| | |||| ||| ||||||||||| ||||| ||||||||||
Sbjct 61 TACTATTGAAAATGTTAAGGCTAAAATTCAA-GACAAAGAAGGTATTCCCCCTGACCAAC 119
Query 25120 AGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179
| | | |||||||| || ||||| | ||||||| ||| ||| | ||||| ||||
Sbjct 120 AAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCTGATTATAATA 179
Query 25180 TTCAAAAAGAATCCACGCTACAT 25202
| ||||||||||| || || |||
Sbjct 180 TCCAAAAAGAATCTACACTTCAT 202
>seq2544
Length=277
Score = 113 bits (124), Expect = 4e-20
Identities = 151/207 (73%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||||||||| ||| | || || ||| | || || | ||||| || | |||
Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || | || || | |||| ||| || || ||||| ||||| || ||
Sbjct 116 GATACAATTGAA--AATGTTAAAACTAAAATTCAA-GATAAGGAAGGTATTCCTCCGGAT 172
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||| | | || ||||| || || || || ||||||| || ||| | |||||||
Sbjct 173 CAACAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTAC 232
Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202
||||||||||||||||| || || |||
Sbjct 233 AATATTCAAAAAGAATCTACACTTCAT 259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433306664012600
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