Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq50 168 7e-37 seq684 123 3e-23 seq265 120 3e-22 seq314 118 1e-21 seq623 114 1e-20 >seq50 Length=3512070 Score = 168 bits (186), Expect = 7e-37 Identities = 149/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||||||||| ||||||| |||||||||||| ||||| ||||| ||||| |||| ||| Sbjct 996446 ATGTATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 996505 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || || || ||||||||| ||||| || || ||| Sbjct 996506 AAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 996565 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || ||||| || ||||||||||| || || | ||| |||||||||| Sbjct 996566 TTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 996625 Query 93542 TTCTCA 93547 || ||| Sbjct 996626 TTTTCA 996631 Score = 116 bits (128), Expect = 4e-21 Identities = 167/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | |||| || || | |||||||| ||||| | ||||| | || |||| | Sbjct 996119 AACCT-CATCTCTAGAAATAAGTTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTCT 996177 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 | || | ||| || || | ||| ||||||||| ||| || |||||||| || || |||| Sbjct 996178 TTTTTAACCAGAAAATAGCAGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAA 996237 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 | || || | |||||| | |||| | || | | | | ||||| ||||| ||||||| Sbjct 996238 AAGCAACCACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAAT 996297 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||||||| || ||| || | |||| ||||||||||||| | | |||| Sbjct 996298 GAGCTTTTTTTGCAACACATGGCAAATTTTCAATAGCGTTAAATAAGAAGTCTC 996351 >seq684 Length=395213 Score = 123 bits (136), Expect = 3e-23 Identities = 85/95 (89%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 155728 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 155787 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||||| || || Sbjct 155788 GTGGGTTCGAACCCCACACCTGGCAAATTTTTTTT 155822 >seq265 Length=1149394 Score = 120 bits (132), Expect = 3e-22 Identities = 83/93 (89%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 1130248 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 1130189 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||||||||||||||| |||| | ||| Sbjct 1130188 GTGGGTTCGAACCCCACACCTGGCAAAATTTTA 1130156 >seq314 Length=178692 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 48905 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 48846 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 48845 GTGGGTTCGAACCCCACACCTGGCAAA 48819 >seq623 Length=301109 Score = 114 bits (126), Expect = 1e-20 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 172144 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 172085 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 |||||||||||||| | ||||| Sbjct 172084 TTCGAACCCCACACTTAGCAAAT 172062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556832678529600