Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq31 176 8e-39 seq108 161 2e-34 seq1683 152 9e-32 seq87 118 2e-21 >seq31 Length=1439309 Score = 176 bits (194), Expect = 8e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | ||||||||| || || || || ||||| || || |||||||| | Sbjct 961506 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961565 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| || |||||||| | || || || || || || | || ||| || || || | Sbjct 961566 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 961625 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| ||||| || ||| || || |||| | ||| | Sbjct 961626 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAA 961685 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 |||| | |||||||||||||| || ||||| || || || |||||||| || Sbjct 961686 CTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATGAT 961737 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| |||||||||| || || || || ||||| || || |||||||| | Sbjct 960757 TTCCTCCGCGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAG 960816 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| || |||||||| | ||| || || || || || | | |||||| || || | Sbjct 960817 AGAGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAG 960876 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| ||||| ||| ||| || || || | | ||| | Sbjct 960877 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAA 960936 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | || || || ||||| ||||| || ||||| || || |||||| Sbjct 960937 CTTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 960986 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | ||||||||| || || || || ||||| || || |||||||| | Sbjct 961278 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961337 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| || |||||||||| || || || || || || | | ||||||||| || | Sbjct 961338 AGAGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGG 961397 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| |||||||||||||| ||||| ||| ||| || || || | | ||| | Sbjct 961398 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAA 961457 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | || || || ||||| ||||| || ||||| || || |||||| Sbjct 961458 CGTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 961507 Score = 167 bits (184), Expect = 4e-36 Identities = 182/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 68220 ATGTGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGG 68279 || ||||| || ||||||| ||||| | ||| || | ||| || || || ||||| || Sbjct 964079 ATATGATTATACATTCCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGA 964138 Query 68280 ATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTT 68339 ||||||||||| || || || || |||||||||| || || || || || || | | | Sbjct 964139 ATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGT 964198 Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| || || ||||| ||||| || ||||||||||| || || || ||| || ||| Sbjct 964199 TGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTG 964258 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | ||| ||||| ||||| ||||| || || ||||| || ||||| || || ||| Sbjct 964259 TCTGAAGCTTCAACTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGC 964318 Query 68460 AT 68461 || Sbjct 964319 AT 964320 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| ||||| | |||||||||||| || || || ||||||||||| || ||||| | Sbjct 960530 TCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 960589 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 |||||| || |||||||| | || || || || || || | || ||| || || || || Sbjct 960590 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 960649 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||| || ||||||||||| || || ||| ||| || || || | | ||| || Sbjct 960650 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAAC 960709 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || || || ||||| || || || ||||| || || |||||| Sbjct 960710 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 960758 Score = 156 bits (172), Expect = 8e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || |||||||| || |||||||| |||||||| || |||||||| | || Sbjct 964780 TGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGT 964839 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | | |||||| || |||||||| || || || ||||||||||| Sbjct 964840 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTA 964899 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || ||| || ||||||| | ||| ||||| |||||||| |||||||| || Sbjct 964900 GCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTT 964959 Query 68439 AGGGTCTTGACGAATATCTGCATT 68462 | ||||| || || ||||||||| Sbjct 964960 AAAGTCTTAACAAAGATCTGCATT 964983 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | ||| || || || || || || || |||||||| |||||||| ||| Sbjct 964322 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 964381 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||||| ||| || || || || || | | ||||||||| || ||| Sbjct 964382 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 964441 Query 68355 ATGCCTTCCTTGTCTTGAATCTT 68377 || ||||| |||||||||||||| Sbjct 964442 ATTCCTTCTTTGTCTTGAATCTT 964464 >seq108 Length=811940 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | || || || || ||||||||||| ||||||||||| Sbjct 249227 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAA 249286 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| ||||| || || || || || ||||| |||||||| || ||| Sbjct 249287 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249346 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| ||||| || || || |||| || | ||| ||| Sbjct 249347 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACT 249406 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| |||||||| |||||||| || || ||||| Sbjct 249407 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||||||| || ||||| || ||||||||||| || |||||||| || | ||| | ||| Sbjct 251206 CGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCA 251265 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||||| || || || || || || | |||||| || || |||||||| ||||||||| Sbjct 251266 TCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTG 251325 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| || || || || || ||||| |||| | ||||| |||| || || Sbjct 251326 TCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAGTTATT 251385 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 ||||| || || | || ||||| || |||||||| || Sbjct 251386 GTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGAT 251423 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||| | ||| || || || |||||||| || |||||||| || Sbjct 248999 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAA 249058 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| || || || || || || || | ||| ||||| || || ||| Sbjct 249059 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 249118 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| ||||| || || || || ||||| | | ||| ||| Sbjct 249119 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACT 249178 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| |||||||| |||||||| || || ||||| Sbjct 249179 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || |||||||| || || |||||||| Sbjct 250738 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 250797 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || || || || || || || | ||| |||||||| || ||| Sbjct 250798 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 250857 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| || || || || ||||| || | | ||| ||| Sbjct 250858 ATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 250917 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || |||||||| || || |||||||| || ||||| Sbjct 250918 TCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | || || || || |||||||| || || |||||||| Sbjct 249455 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 249514 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| ||||| || || || || || ||||| |||||||| || ||| Sbjct 249515 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249574 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || ||||| ||||||||||| ||||| || || Sbjct 249575 ATACCTTCTTTGTCTTGAATTTTTGCTTTTAC 249606 >seq1683 Length=220 Score = 152 bits (168), Expect = 9e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300 ||||| ||||| || | || || || || ||||||||||| |||||||| || || || Sbjct 219 CGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGTA 160 Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 | |||||||| | ||| || || || || || | |||||||||||| || ||||| ||| Sbjct 159 CGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCT 100 Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 || ||||||||||| || ||||| || || || || || | | ||| ||||| | Sbjct 99 TCTTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAGA 40 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || || |||||||| || || ||||||||||| || ||| Sbjct 39 GTAATAGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGC 1 >seq87 Length=1479609 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| || ||||| || || | || | ||||||||||| ||||| || || || | Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || | ||| || || ||||| || ||||| || || ||||| || || || || | Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || || |||| || ||||||||| | ||||| ||||| ||||| | || || || | Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279 Query 68452 ATATCTGCATTATGCTAT 68469 |||||||||| || ||| Sbjct 253280 ATATCTGCATCGTGGTAT 253297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921575858068800