Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24]
4,040 sequences; 230,340,171 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq31 176 8e-39
seq108 161 2e-34
seq1683 152 9e-32
seq87 118 2e-21
>seq31
Length=1439309
Score = 176 bits (194), Expect = 8e-39
Identities = 178/232 (77%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
||||||| ||||| | ||||||||| || || || || ||||| || || |||||||| |
Sbjct 961506 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961565
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
||||||| || |||||||| | || || || || || || | || ||| || || || |
Sbjct 961566 AGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAG 961625
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| ||||| || ||||||||||| ||||| || ||| || || |||| | ||| |
Sbjct 961626 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAA 961685
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|||| | |||||||||||||| || ||||| || || || |||||||| ||
Sbjct 961686 CTTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATGAT 961737
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
||||||||||||| |||||||||| || || || || ||||| || || |||||||| |
Sbjct 960757 TTCCTCCGCGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAG 960816
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
||||||| || |||||||| | ||| || || || || || | | |||||| || || |
Sbjct 960817 AGAGTGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAG 960876
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| ||||| || ||||||||||| ||||| ||| ||| || || || | | ||| |
Sbjct 960877 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAA 960936
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| | || || || ||||| ||||| || ||||| || || ||||||
Sbjct 960937 CTTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 960986
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
||||||| ||||| | ||||||||| || || || || ||||| || || |||||||| |
Sbjct 961278 TTCCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTG 961337
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
||||||| || |||||||||| || || || || || || | | ||||||||| || |
Sbjct 961338 AGAGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGG 961397
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| ||||| |||||||||||||| ||||| ||| ||| || || || | | ||| |
Sbjct 961398 GAATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAA 961457
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || | || || || ||||| ||||| || ||||| || || ||||||
Sbjct 961458 CGTCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 961507
Score = 167 bits (184), Expect = 4e-36
Identities = 182/242 (75%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 68220 ATGTGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGG 68279
|| ||||| || ||||||| ||||| | ||| || | ||| || || || ||||| ||
Sbjct 964079 ATATGATTATACATTCCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGA 964138
Query 68280 ATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTT 68339
||||||||||| || || || || |||||||||| || || || || || || | | |
Sbjct 964139 ATGTTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGT 964198
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
||||| || || ||||| ||||| || ||||||||||| || || || ||| || |||
Sbjct 964199 TGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTG 964258
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|||| | ||| ||||| ||||| ||||| || || ||||| || ||||| || || |||
Sbjct 964259 TCTGAAGCTTCAACTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGC 964318
Query 68460 AT 68461
||
Sbjct 964319 AT 964320
Score = 156 bits (172), Expect = 8e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
|||||| ||||| | |||||||||||| || || || ||||||||||| || ||||| |
Sbjct 960530 TCCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 960589
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|||||| || |||||||| | || || || || || || | || ||| || || || ||
Sbjct 960590 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 960649
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
||| ||||| || ||||||||||| || || ||| ||| || || || | | ||| ||
Sbjct 960650 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAAC 960709
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||| | || || || ||||| || || || ||||| || || ||||||
Sbjct 960710 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 960758
Score = 156 bits (172), Expect = 8e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || || || |||||||| || |||||||| |||||||| || |||||||| | ||
Sbjct 964780 TGAAGAGTAGATTCTTTTTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGT 964839
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | | |||||| || |||||||| || || || |||||||||||
Sbjct 964840 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTGAATCTTA 964899
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| || ||| || ||||||| | ||| ||||| |||||||| |||||||| ||
Sbjct 964900 GCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATAGTTTTTCCTGTT 964959
Query 68439 AGGGTCTTGACGAATATCTGCATT 68462
| ||||| || || |||||||||
Sbjct 964960 AAAGTCTTAACAAAGATCTGCATT 964983
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | ||| | ||| || || || || || || || |||||||| |||||||| |||
Sbjct 964322 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 964381
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || || |||||||||| ||| || || || || || | | ||||||||| || |||
Sbjct 964382 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 964441
Query 68355 ATGCCTTCCTTGTCTTGAATCTT 68377
|| ||||| ||||||||||||||
Sbjct 964442 ATTCCTTCTTTGTCTTGAATCTT 964464
>seq108
Length=811940
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| ||||| || | || || || || ||||||||||| |||||||||||
Sbjct 249227 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAA 249286
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| ||||| || || || || || ||||| |||||||| || |||
Sbjct 249287 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249346
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| ||||| || || || |||| || | ||| |||
Sbjct 249347 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACT 249406
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || ||||| |||||||| |||||||| || || |||||
Sbjct 249407 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306
|||||||| || ||||| || ||||||||||| || |||||||| || | ||| | |||
Sbjct 251206 CGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCA 251265
Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366
||||||| || || || || || || | |||||| || || |||||||| |||||||||
Sbjct 251266 TCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTG 251325
Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426
|||||||| || || || || || ||||| |||| | ||||| |||| || ||
Sbjct 251326 TCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTACCTCCAGAGTTATT 251385
Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
||||| || || | || ||||| || |||||||| ||
Sbjct 251386 GTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGAT 251423
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||| | ||| || || || |||||||| || |||||||| ||
Sbjct 248999 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAA 249058
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||||| || || || || || || || | ||| ||||| || || |||
Sbjct 249059 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 249118
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| ||||| || || || || ||||| | | ||| |||
Sbjct 249119 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACT 249178
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || ||||| |||||||| |||||||| || || |||||
Sbjct 249179 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249225
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | || || || || |||||||| || || ||||||||
Sbjct 250738 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 250797
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| || || || || || || || | ||| |||||||| || |||
Sbjct 250798 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 250857
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| |||||||||||||| || || || || ||||| || | | ||| |||
Sbjct 250858 ATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 250917
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || |||||||| || || |||||||| || |||||
Sbjct 250918 TCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| ||||| || | || || || || |||||||| || || ||||||||
Sbjct 249455 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 249514
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| ||||| || || || || || ||||| |||||||| || |||
Sbjct 249515 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249574
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386
|| ||||| ||||||||||| ||||| || ||
Sbjct 249575 ATACCTTCTTTGTCTTGAATTTTTGCTTTTAC 249606
>seq1683
Length=220
Score = 152 bits (168), Expect = 9e-32
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300
||||| ||||| || | || || || || ||||||||||| |||||||| || || ||
Sbjct 219 CGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCAGAAAGAGTA 160
Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360
| |||||||| | ||| || || || || || | |||||||||||| || ||||| |||
Sbjct 159 CGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGGGGAATACCT 100
Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420
|| ||||||||||| || ||||| || || || || || | | ||| ||||| |
Sbjct 99 TCTTTGTCTTGAATTTTAGCCTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCAAGA 40
Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|| || |||||||| || || ||||||||||| || |||
Sbjct 39 GTAATAGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGC 1
>seq87
Length=1479609
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331
||||||| || ||||| || || | || | ||||||||||| ||||| || || || |
Sbjct 253100 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 253159
Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391
| || | ||| || || ||||| || ||||| || || ||||| || || || || |
Sbjct 253160 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 253219
Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
| || || |||| || ||||||||| | ||||| ||||| ||||| | || || || |
Sbjct 253220 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 253279
Query 68452 ATATCTGCATTATGCTAT 68469
|||||||||| || |||
Sbjct 253280 ATATCTGCATCGTGGTAT 253297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921575858068800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |