Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq31 123 2e-23 seq2544 104 2e-17 seq108 98.7 7e-16 seq65 86.0 4e-12 >seq31 Length=1439309 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| |||| || |||||||| || | ||| ||||| || Sbjct 961734 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 961675 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| |||||||| || | ||| | || Sbjct 961674 GATACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 961615 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||||||||| |||||||| |||||| || ||| | | ||||| ||| Sbjct 961614 CAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTATAAT 961555 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| ||||||||||||||| ||||||| | | ||||||||| Sbjct 961554 ATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961507 Score = 114 bits (126), Expect = 9e-21 Identities = 169/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || || ||||||||| | ||| ||||| || Sbjct 964320 ATGCAAATCTTTGTCAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAAGCTTCA 964261 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| || ||| |||||||| || | ||| | | ||| Sbjct 964260 GACACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 964201 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| ||||||||||||||| || |||| | | ||||| || Sbjct 964200 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 964141 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAAT 22071 |||||||| |||||||| ||||| | || || | | ||||||||| || ||||| Sbjct 964140 ATTCAGAAAGAATCTACACTTCACCTAGTGTTGAGACTTCGAGGAGGA-ATGTATAAT 964084 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || || || ||||| | ||| ||||| | Sbjct 960986 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 960927 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | | ||| || ||| |||||||| || | ||| | || Sbjct 960926 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 960867 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || |||||||||||||| || |||||| || ||| | | ||||| || Sbjct 960866 ACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACACTCTCTGATTATAA 960807 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||| ||||||||||||||| ||||||| || | || |||||| Sbjct 960806 TATTCAGAAAGAATCTACTCTTCATCTGGTATTGCGACTTCGCGGAGGA 960758 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || ||| |||| || ||||| || ||||| || ||| | ||| ||||| Sbjct 964985 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACTATCACCTTAGAAGTTGAAGCT 964926 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 |||| || | | || | ||| || ||| ||||||||||| | || | | Sbjct 964925 TCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGAT 964866 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | || |||||||| |||||||| |||||| | ||| | | ||||| Sbjct 964865 CAACAACGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 964806 Query 22011 AATATTCAGAAGGAATCTACTCTTCAT 22037 |||||||| || ||||||||||||||| Sbjct 964805 AATATTCAAAAAGAATCTACTCTTCAT 964779 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| |||||||| || | ||| | || ||| || | || |||||||| ||| Sbjct 961129 AAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAGCGATTGATTTTTGCTGGAAAA 961070 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| |||||| || ||| | | ||||| ||||||||||| ||||||||||||||| Sbjct 961069 CAACTTGAAGATGGAAGAACACTCTCAGATTATAATATTCAGAAAGAATCTACTCTTCAT 961010 Query 22038 ATGGTATTACGTTTACGAGGAGGA 22061 ||||||| | | ||||||||| Sbjct 961009 TTGGTATTGAGACTTCGAGGAGGA 960986 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || || || ||||| | || ||||| | Sbjct 961507 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACTATTACACTTGACGTTGAAGCTTC 961448 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | | ||| || ||| || ||||| || | || |||| Sbjct 961447 GGATACGATAGAGAACGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCA 961388 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || |||||||| ||||||||||||||| || ||| | | ||||| || Sbjct 961387 ACAACGTTTGATTTTTGCTGGTAAACAACTAGAAGATGGAAGAACACTCTCAGATTATAA 961328 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||| ||||||||||||||| ||||||| | | ||||||||| Sbjct 961327 TATTCAGAAAGAATCTACTCTTCATTTGGTATTGAGACTTCGAGGAGGA 961279 >seq2544 Length=277 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || || ||||| ||||| | ||| ||||| | Sbjct 56 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 115 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| |||||| ||||| || ||| | ||| | ||| Sbjct 116 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCTCCGGATCAA 175 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || || | |||||| ||| | ||||||||||| Sbjct 176 CAGAGACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAAT 235 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||| || |||||||| |||||| | || || || Sbjct 236 ATTCAAAAAGAATCTACACTTCATCTTGTTTTGCG 270 >seq108 Length=811940 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | ||||| ||||| ||||| | ||| ||||| | Sbjct 249225 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 249166 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||||| || ||||| ||| | ||| | ||| Sbjct 249165 GACACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 249106 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| |||||| | |||||| | || | | ||||| ||| Sbjct 249105 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCTGATTATAAT 249046 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || ||||| |||||||| | ||| | ||| | ||||| || Sbjct 249045 ATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGG 248999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 21912 AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCT 21971 ||||||||| || || ||||| ||| | || ||||||||||||| ||||||||| Sbjct 249602 AAGCAAAAA-TTCAAGACAAAGAAGGTATTCCGCCTGACCAACAGAGACTGATCTTTGCT 249544 Query 21972 GGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 22031 || ||||| | |||||| ||| | |||||||||||||||| || |||||||| Sbjct 249543 GGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCAAAAAGAATCTACA 249484 Query 22032 CTTCATATGGTATTACG 22048 |||||| | || || || Sbjct 249483 CTTCATCTTGTTTTGCG 249467 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | |||||||| || || ||||| || || |||| || ||| || Sbjct 251420 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTAGAGGCCTCA 251361 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || || || || | || | | || Sbjct 251360 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 251301 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||||||||| ||||||||||||||| | || | | ||||| ||| Sbjct 251300 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAAT 251241 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || || || || || ||| | ||||| ||||| |||| ||| Sbjct 251240 ATTCAAAAAGAGTCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 251193 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | ||||| ||||| ||||| | ||| ||||| Sbjct 249453 ATGCAAATTTTTGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTAT 249394 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || | || ||||||| || ||||| ||| | || ||||| Sbjct 249393 GATGCCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCGCCTGACCAA 249334 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| ||||| | |||||| ||| | ||||||| ||| Sbjct 249333 CAGAGACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAAT 249274 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || || |||||||| |||||| | || || || Sbjct 249273 ATCCAAAAAGAATCTACACTTCATCTTGTTTTGCG 249239 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| | ||||| || || ||||| | ||| ||||| | Sbjct 250964 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAGACTATTACTCTTGAAGTTGAAGCTTCC 250905 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || ||| || ||||| ||| | ||| ||||| Sbjct 250904 GATACCATTGAAAATGTAAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 250845 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| |||||| | |||||| ||| | ||||||||||| Sbjct 250844 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTACAAT 250785 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||| || ||||| || || ||| | || |||| Sbjct 250784 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACG 250750 >seq65 Length=484858 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | ||||||||||| |||||| | |||||| | || | | ||||| Sbjct 16968 CAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAGGACACTTTCAGATTAT 17027 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||||||| | ||| ||||| |||||||| | || || Sbjct 17028 AATATTCAGAAGGAATCTACATTACATTTGGTACTACGTTTAAGGGGTGG 17077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358107166830160