Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq199 104 3e-17 seq663 100 3e-16 seq873 96.9 4e-15 seq99 87.8 2e-12 seq438 84.2 2e-11 seq108 84.2 2e-11 seq362 82.4 8e-11 >seq199 Length=2136992 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 56997 GAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| ||||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 2094335 GAAAAATAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2094276 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 2094275 TACTAACCACTATACTACCGAGGA 2094252 >seq663 Length=487541 Score = 100 bits (110), Expect = 3e-16 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 194865 AAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 194922 Query 57058 TCACCACTATACTACCGAGGATTGAATAT 57086 | ||||||||||||||||||| | |||| Sbjct 194923 TGACCACTATACTACCGAGGAATCTATAT 194951 >seq873 Length=219276 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 56998 AAAAATTT-----TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 167984 AAAAATTTAGATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 168043 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 168044 GATACTGACCACTATACTACCGAGGA 168069 >seq99 Length=495943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 26117 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 26176 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 26177 TAACCACTATACTATCGAGGA 26197 >seq438 Length=261999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 65458 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGA 65400 >seq108 Length=811940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| |||||||| || || | || ||| || |||| || Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || || ||| ||| |||| || || | | | | || ||| | ||| || Sbjct 250630 ATACCTTCTTTATCC-TGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAAC 250688 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || ||||| || || || ||||| || || |||||||| Sbjct 250689 TTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 >seq362 Length=546631 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 56998 AAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 211802 AAAAATTATTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 211861 Query 57057 CTCACCACTATA 57068 || ||||||||| Sbjct 211862 CTAACCACTATA 211873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543185367753600