Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq108 122 9e-23 seq2544 104 2e-17 >seq108 Length=811940 Score = 122 bits (134), Expect = 9e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || |||| ||||||||| |||||||||| ||||||| |||||||| || || || | | Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCAGAT 251253 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || ||||||||||| | | |||| | | || || || || || Sbjct 251254 AAT-GTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 251312 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||| | ||||| | ||| | ||| || | | ||| | Sbjct 251313 AATTCCTTCCTTGTC-TTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTA 251371 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | |||||||| |||| ||||| ||||| ||||||||| Sbjct 251372 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 251421 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| |||||||||| |||| || |||||||| || || || Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || |||||||| | | | || | | |||||| || ||||| Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||| || |||| | ||| | || |||| | || || Sbjct 250630 ATACCTTCTTTATC-CTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAAC 250688 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||| || || ||||| ||||| Sbjct 250689 TTCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 250736 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||| | | |||| || |||||||| ||||| ||| | |||||| || || Sbjct 250755 AACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTC 250814 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | |||||| || | | |||| | | ||||||||| ||||| |||||||||||||| | Sbjct 250815 CAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTC-TT 250873 Query 138525 GATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || | ||||| | ||| | ||| |||| | || || || | || | || | Sbjct 250874 GAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCAAGAGTAATAGTCT 250933 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || |||||||| || ||||| ||||| Sbjct 250934 TTCCCGTAAGAGTTTTGACGAAAATTTGCAT 250964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | || || ||||| || || || ||| | |||||| Sbjct 249239 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGTACGACCA 249298 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||||| | | |||| || | ||||||||| || || |||||||||||| Sbjct 249299 TCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTG 249358 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||||| ||||| | ||| | || || | || || || | || | Sbjct 249359 TC-TTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACTTCAAGAGTAAT 249417 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || ||||| || |||||||| ||||| Sbjct 249418 AGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCAT 249453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || |||||||| || || || | ||||| || || | |||||| || | | Sbjct 249032 GATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCA 249091 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | | |||||| || ||||| |||||||||||||| ||| |||||| ||||| Sbjct 249092 AAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTC-TTGAATTTTTGCTTTTAC 249150 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||||| | || || || | || | |||||||| || ||||| || Sbjct 249151 ATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTT 249210 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 249211 GACAAAAATTTGCAT 249225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | || || |||||||| ||||| ||| | |||||| Sbjct 249467 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 249526 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | |||||||| | | |||| || | ||||||||| || || |||||||||||| Sbjct 249527 TCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCTTCTTTG 249586 Query 138520 TCGGTGATTTTTTGTTTT 138537 || ||| |||||| ||| Sbjct 249587 TC-TTGAATTTTTGCTTT 249603 >seq2544 Length=277 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| | ||| | | || || |||||||| ||||| ||| | |||||| Sbjct 270 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCA 211 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | || ||||| | | |||| || | |||||| |||||||| |||||||| || Sbjct 210 TCTTCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTA 151 Query 138520 TCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| |||| ||||||| | ||| | || || | | || || || | || | Sbjct 150 TCT-TGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAAT 92 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| |||||||||||||| || ||||| Sbjct 91 TGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496237338748800