Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq31 150 1e-31 seq108 145 5e-30 seq2544 141 7e-29 seq87 95.1 9e-15 >seq31 Length=1439309 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || |||| ||||| ||||| ||||| || ||||| ||||| Sbjct 964094 CCTCCTCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAA 964153 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| |||||| ||||| | || ||||| ||||| || ||| Sbjct 964154 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 964213 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || ||| ||| | ||||| || || | ||| || Sbjct 964214 ATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAACT 964273 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||||||||||| ||||| || |||||||| ||||| ||||||||| Sbjct 964274 TCTAAGGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTGCATA 964321 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || || |||||||| ||||| ||||| || || || ||||| | Sbjct 961280 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961339 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||||| |||||| ||||| | |||||||| |||||||| ||| Sbjct 961340 AGTGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 961399 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| || ||||| | ||||| ||||| | ||| ||| Sbjct 961400 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACG 961459 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || || || |||||||| ||||| |||||||| Sbjct 961460 TCAAGTGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 961506 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || || || || || ||||| |||||||| || |||||||| | Sbjct 960531 CCTCCTCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAG 960590 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||| ||||| | ||||| || || || || ||| Sbjct 960591 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 960650 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || |||||| | ||||| ||||| | ||| || Sbjct 960651 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAACT 960710 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || || || |||||||| ||||| |||||||| Sbjct 960711 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 960757 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || || |||||||| ||||| ||||| || || || ||||| | Sbjct 961508 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961567 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||| ||||| | ||||| || || || || ||| Sbjct 961568 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 961627 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || |||||| | ||||| ||||| | ||| || Sbjct 961628 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAACT 961687 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || ||||| |||||||| ||||| Sbjct 961688 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 961734 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | |||||| ||||| ||||| || || || ||||| ||| |||| | ||| Sbjct 960774 AATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAGAGAGTGTTCTTCCATCT 960833 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||||||||| | |||||||| ||||| || ||||||||||| || || Sbjct 960834 TCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAGGAATTCCTTCTTTATCT 960893 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || ||||| | ||||| ||||| | ||| || || | ||||| || Sbjct 960894 TGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACTTCAAGTGTAATAGTC 960953 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| |||||||| Sbjct 960954 TTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 960985 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || || |||||||| ||||| ||||| || || || ||||| | Sbjct 960987 CCTCCTCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAG 961046 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||| ||||| | ||||| ||||| || || ||| Sbjct 961047 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGCTGCTGATCAGGAGGA 961106 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || |||||| ||||| | ||||| ||||| | ||| || Sbjct 961107 ATTCCTTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACT 961166 Query 15130 TCTAAGGTAATGGTTTTACC--TGTCAGAGTTTTTACA 15165 || | ||||| || || || || | || ||||||| Sbjct 961167 TCAAGTGTAATAGTCTTTCCAGTGNCTTAGCTTTTACA 961204 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| || |||||||| || ||||| || ||||| || || ||||| | Sbjct 964322 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 964381 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| ||||| ||||| | |||||||| |||||||| ||| Sbjct 964382 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGA 964441 Query 15070 ATTCCTTCCTTGTC 15083 |||||||| ||||| Sbjct 964442 ATTCCTTCTTTGTC 964455 >seq108 Length=811940 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || ||| | ||| ||||| || |||||||| || ||||||||| Sbjct 250738 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 250797 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| |||||||| ||||| | ||||| | ||||||||| ||| Sbjct 250798 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 250857 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| ||| ||||||| |||| || |||||| | ||| || Sbjct 250858 ATACCTTCTTTGTCTTGAATCTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 250917 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || || |||||||| || |||||||||||| Sbjct 250918 TCAAGAGTAATAGTCTTTCCCGTAAGAGTTTTGACGAAAATTTGCATA 250965 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||||| | |||||| ||||| |||||||| || || |||||| Sbjct 249227 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAA 249286 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| || ||||| ||||| | |||| | ||||||||| ||| Sbjct 249287 AGAGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGA 249346 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||||||| |||| || | ||| | ||| || Sbjct 249347 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACT 249406 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| |||||||| || ||||| || ||||||||||||||| Sbjct 249407 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTGCATA 249454 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || ||||| | |||||| ||||| |||||||| || || ||||| Sbjct 250966 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAA 251025 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| |||||||| ||||| | ||||| | |||||| ||| ||| Sbjct 251026 AGTGTACGACCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 251085 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| ||| |||| || ||||| | ||| || Sbjct 251086 ATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACT 251145 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| ||||| || || || ||||| |||||||||||||| Sbjct 251146 TCTAAAGTAATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTGCAT 251192 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | || |||||||| || || || |||||||| || || ||||| Sbjct 250510 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 250569 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| ||||| | ||||| | |||||| ||| ||| Sbjct 250570 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTCTGTTGATCGGGAGGA 250629 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| | || ||| |||| ||||||||| ||| || Sbjct 250630 ATACCTTCTTTATCCTGAATTTTAGTCTTAACATTTTCAATAGTATCGGATGCTTCAACT 250689 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| ||||| ||||| ||||| || || |||||||||||| Sbjct 250690 TCTAAAGTAATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCATA 250737 Score = 129 bits (142), Expect = 4e-25 Identities = 186/260 (72%), Gaps = 13/260 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | || |||||||| || || || |||||||| || || ||||| | Sbjct 251194 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGACTCTTTTTGAATATTATAATCA--G 251251 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||||| |||||| ||||| | ||||| | || || || || Sbjct 251252 ATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTG 251311 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| |||||| ||||||| |||| || ||||| |||| Sbjct 251312 GAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCTA 251371 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA----TATTTG-- 15181 | || | || || ||||||||||||| ||||| ||||| || |||| ||| || Sbjct 251372 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGATTATCTGTA 251431 Query 15182 ---AAATAAATTTTTTAATA 15198 ||| ||||| ||||||| Sbjct 251432 AAAAAAAAAATTATTTAATA 251451 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| || || ||||| || | | | ||||| |||||| Sbjct 249023 TGAAGAGTCGATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCTTCCAATTGT 249082 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | |||||| || ||||| ||||| ||||| |||||| Sbjct 249083 TTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTT 249142 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||||| |||| || || ||| | ||| || || | ||||| |||||||| || Sbjct 249143 GCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTG 249202 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||||||| Sbjct 249203 AGAGTCTTGACAAAAATTTGCATA 249226 >seq2544 Length=277 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | |||||| ||||| |||||||| || ||||||||| ||| | | | ||| Sbjct 267 AAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCT 208 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || || ||||| | |||| | |||||| || ||||| |||||||| || Sbjct 207 TCCAACTGCTTACCAGCAAAGATCAGTCTCTGTTGATCCGGAGGAATACCTTCCTTATCT 148 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| |||| ||| |||| || ||||| | ||| || ||||| ||||| ||| Sbjct 147 TGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTT 88 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||||||||| ||||||||| Sbjct 87 TTTCCAGTAAGAGTTTTTACAAATATTTGCATA 55 >seq87 Length=1479609 Score = 95.1 bits (104), Expect = 9e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||| || ||||| | || | ||| || || || ||| |||||||| || Sbjct 253135 TCTTCTAATTGCTTTCCAGCAAAAATAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTA 253194 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| ||| ||||||||||||| |||||| || | || || Sbjct 253195 TCCTGAATTTTAGCTTTCACATTTTCTATAGTATCTGATGCTTCTACTTCAAGAGTGATA 253254 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||| |||||| ||||| || ||||| Sbjct 253255 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 253289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357374402911400