Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq31 125 2e-23 seq108 114 3e-20 seq87 113 1e-19 seq2544 93.3 1e-13 >seq31 Length=1439309 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || ||||| || || || || || || | ||| || || | | ||| Sbjct 964099 TCGAAGTCTCAACACTAGGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAAAGAGT 964158 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || || || || ||||| | ||| || || || ||| |||||| Sbjct 964159 TCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCC 964218 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || || || | ||||||| | ||| || || || Sbjct 964219 TTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAA 964278 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| ||||||||||| ||||| ||||| Sbjct 964279 GGTAATGGTCTTACCAGTGAGAGTTTTGACAAAGATTTG 964317 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || || || ||||| || || || || | || || |||| | || Sbjct 960765 CGAAGTCGCAATACCAGATGAAGAGTAGATTCTTTCTGAATATTATAATCAGAGAGTGTT 960824 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| ||||| || || || || || | ||| || || || ||| ||||||| Sbjct 960825 CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGATCAGGAGGAATTCCT 960884 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| ||| ||| || | || || | | ||| || || | Sbjct 960885 TCTTTATCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACTTCAAGT 960944 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| ||||| ||||| Sbjct 960945 GTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTG 960982 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||| || || || || ||||||| ||||| || | || Sbjct 960536 TCGAAGTCTCAATACCAAGTGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAGAGTGT 960595 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || ||||| || || || | || ||||| || ||| |||||| Sbjct 960596 TCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCC 960655 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || ||| || | || || | | ||| || || | Sbjct 960656 TTCTTTATCTTGAATCTTAGCTTTTACGTTCTCTATTGTATCCGAAGCTTCAACTTCAAG 960715 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||| ||||| ||||| Sbjct 960716 TGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAGATTTG 960754 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | || ||||| || || || || | || || || | | || Sbjct 961285 TCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGT 961344 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || || || || || || | ||| || ||||| || |||||| Sbjct 961345 TCTTCCATCTTCTAGTTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGAATTCC 961404 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| ||| || | || || | | ||| || || | Sbjct 961405 TTCTTTGTCTTGAATCTTAGCCTTTACGTTCTCTATCGTATCCGAAGCTTCAACGTCAAG 961464 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| ||||| ||||| Sbjct 961465 TGTAATAGTCTTTCCAGTGAGAGTTTTGACAAAGATTTG 961503 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | || ||||| || || || || | || || || | | || Sbjct 961513 TCGAAGTCTCAATACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCTGAGAGTGT 961572 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || ||||| || ||||| | || ||||| || ||| |||||| Sbjct 961573 TCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCC 961632 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || || | || |||| | ||| || || | Sbjct 961633 TTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCTGAAGCTTCAACTTCAAG 961692 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| |||||||| || Sbjct 961693 AGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTG 961731 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || | ||||| || || |||||||||| || || || | | ||| Sbjct 964327 TCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGT 964386 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| ||||| || || || || || | ||| || ||||| || |||||| Sbjct 964387 TCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGTTGGTCAGGGGGAATTCC 964446 Query 199528 TTCTCGCTCCTGAATCTT 199545 |||| || |||||||| Sbjct 964447 TTCTTTGTCTTGAATCTT 964464 >seq108 Length=811940 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||| || ||||| | || || |||| | || | ||||||| Sbjct 249014 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCAGAAAGTGTACGTCCATCT 249073 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| || ||||| | | ||| || || ||| ||| |||||| || Sbjct 249074 TCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 249133 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||| || || ||| | ||||| | | ||| || || | || || || Sbjct 249134 TGAAT-TTTTGCTTTTACATTTTCAATTGTGTCGGAAGCTTCAACTTCAAGAGTAATAGT 249192 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || ||||||||||| Sbjct 249193 TTTACCCGTGAGAGTCTTGACAAAAATTTG 249222 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || || || ||||||| || || || | | ||| Sbjct 249233 CGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGGATATTATAATCGGAAAGAGTA 249292 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||| || || || ||||| || | ||| ||||| || ||| ||| Sbjct 249293 CGACCATCTTCCAACTGTTTACCAGCAAAGATCAGTCTCTGTTGGTCAGGCGGAATACCT 249352 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| |||||||| || ||| | || || | ||| || || | Sbjct 249353 TCTTTGTCTTGAAT-TTTTGCTTTTACATTTTCAATGGCATCATAAGCTTCAACTTCAAG 249411 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||||||||| || ||||||||||| Sbjct 249412 AGTAATAGTTTTACCCGTGAGAGTCTTGACAAAAATTTG 249450 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || ||||| || || || || || ||||| | || || |||| | || Sbjct 250972 CGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTA 251031 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || ||||| || || || | | ||| || || ||| ||| ||| Sbjct 251032 CGACCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCT 251091 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| |||| | | ||| | ||| |||| | ||| || || || Sbjct 251092 TCTTTATCCTGAAT-TTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAA 251150 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| ||||||||||| Sbjct 251151 AGTAATAGTTTTTCCAGTAAGTGTTTTGACAAAAATTTG 251189 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || || || |||||||||||||| | ||| | ||||||| || |||| Sbjct 249328 ACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTATAATATCCA 249269 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| ||||| ||||||||| ||||||| Sbjct 249268 AAAAGAATCTACACTTCATCTTGTTTTGCGACTTCG 249233 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || || || |||||||||||||| | ||| | |||||||||| | || Sbjct 249556 ACTGATCTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTCTTTCCGATTACAATATTCA 249497 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| ||||| ||||||||| ||||||| Sbjct 249496 AAAAGAATCTACACTTCATCTTGTTTTGCGACTTCG 249461 >seq87 Length=1479609 Score = 113 bits (124), Expect = 1e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | || ||||| | ||||| | ||||||||| | |||||||| || || || Sbjct 253102 TTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATA 253161 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT-CACGGATTC 199560 ||||| ||||| || || ||||||||| |||||||| ||| |||| ||| ||| Sbjct 253162 AGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAAT-TTTAGCTTTCACATTTTC 253220 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || |||| || |||||| || | ||||| || |||||||| | |||||||||||| Sbjct 253221 TATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAA 253280 Query 199621 AATTTG 199626 || || Sbjct 253281 TATCTG 253286 >seq2544 Length=277 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| || || ||||||||||||||||| | ||| | |||||||||| | || Sbjct 181 ACTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGTACTCTTTCCGATTACAATATTCA 240 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| ||||| ||||||||| ||||||| Sbjct 241 AAAAGAATCTACACTTCATCTTGTTTTGCGACTTCG 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178860576070680